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(-) Description

Title :  CRYSTAL STRUCTURE OF A LYSIN
 
Authors :  C. J. Porter, A. M. Buckle, J. C. Whisstock
Date :  14 Nov 06  (Deposition) - 05 Dec 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. J. Porter, R. Schuch, A. J. Pelzek, A. M. Buckle, S. Mcgowan, M. C. Wilce, J. Rossjohn, R. Russell, D. Nelson, V. A. Fischetti, J. C. Whisstock
The 1. 6 A Crystal Structure Of The Catalytic Domain Of Plyb A Bacteriophage Lysin Active Against Bacillus Anthracis.
J. Mol. Biol. V. 366 540 2007
PubMed-ID: 17182056  |  Reference-DOI: 10.1016/J.JMB.2006.11.056

(-) Compounds

Molecule 1 - PLYB
    Chains: A, B
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD24
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN
    Gene: PLYB
    Organism Scientific: UNIDENTIFIED PHAGE
    Organism Taxid: 38018
    Strain: BCPI

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:10 , ASN A:11 , LYS A:169 , HOH A:1201 , HOH A:1249 , LYS B:179BINDING SITE FOR RESIDUE ACT A 1019
2AC2SOFTWAREASP A:6 , ASP A:90 , GLU A:92 , TYR A:121 , GLN A:157 , ASP A:171 , HOH A:1109 , HOH A:1169BINDING SITE FOR RESIDUE ACT A 1020
3AC3SOFTWAREASP B:6 , ASP B:90 , GLU B:92 , TYR B:121 , GLN B:157 , ASP B:171 , HOH B:1114 , HOH B:1228BINDING SITE FOR RESIDUE ACT B 1021
4AC4SOFTWARELYS B:70 , VAL B:71 , ARG B:74 , SER B:180 , LEU B:181 , ASP B:182 , HOH B:1133BINDING SITE FOR RESIDUE ACT B 1022
5AC5SOFTWAREASP B:178 , HOH B:1166 , HOH B:1183 , HOH B:1204BINDING SITE FOR RESIDUE ACT B 1023
6AC6SOFTWAREHIS B:124 , PRO B:143 , ARG B:144 , TYR B:145 , HOH B:1069BINDING SITE FOR RESIDUE ACT B 1024

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NW0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NW0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NW0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NW0)

(-) Exons   (0, 0)

(no "Exon" information available for 2NW0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains d2nw0a_ A: automated matches                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeehhhhh..hhhhhhh.eeeeeeeeee.......hhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh......eeeee......hhhhhhhhhhhhhhhhh...eeeee........hhhhh...eeeee...........eeeeeeeeee...eeeeeeee....hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nw0 A   2 GYIVDMSKWNGSPDWDTAKGQLDLVIARVQDGSNYVDPVYKDYVAAMKARNIPFGSYAFCRFVSVEDAKVEARDFWNRGDKDSLFWVADVEVTTMSDMRAGTQAFIDELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCDLWQYDEYGQVPGIGKCDLNRLNGDKSLDWFTGKGEE 190
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181         


Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains d2nw0b_ B: automated matches                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeehhhhh..hhhhhhh.eeeeeeeeee.......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh......eeeee......hhhhhhhhhhhhhhhhh...eeeee........hhhhh...eeeee...........eeeeeeeeee...eeeeeeee....hhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nw0 B   2 GYIVDMSKWNGSPDWDTAKGQLDLVIARVQDGSNYVDPVYKDYVAAMKARNIPFGSYAFCRFVSVEDAKVEARDFWNRGDKDSLFWVADVEVTTMSDMRAGTQAFIDELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCDLWQYDEYGQVPGIGKCDLNRLNGDKSLDWFTGKGEE 190
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2NW0)

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(no "Pfam Domain" information available for 2NW0)

(-) Gene Ontology  (0, 0)

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