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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN APE2225 FROM AEROPYRUM PERNIX K1, PFAM COXG
 
Authors :  X. Jin, A. Bera, S. Wasserman, D. Smith, J. M. Sauder, S. K. Burley, L. Sha York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  03 Nov 06  (Deposition) - 14 Nov 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Uncharacterized Conserved Protein, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Jin, A. Bera, S. Wasserman, D. Smith, J. M. Sauder, S. K. Burley, L. Shapiro
Crystal Structure Of Hypothetical Protein Ape2225 From Aeropyrum Pernix K1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN APE2225
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGX4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: APE2225
    Organism Scientific: AEROPYRUM PERNIX
    Organism Taxid: 56636

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:65 , ARG A:66 , GLY A:92 , ALA A:93 , GLY A:94 , SER A:95BINDING SITE FOR RESIDUE PO4 A 157
2AC2SOFTWAREGLY B:92 , ALA B:93 , GLY B:94 , SER B:95BINDING SITE FOR RESIDUE PO4 B 157

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NS9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:62 -Gly A:63
2Lys A:80 -Pro A:81

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NS9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NS9)

(-) Exons   (0, 0)

(no "Exon" information available for 2NS9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
 aligned with Q9Y9R3_AERPE | Q9Y9R3 from UniProtKB/TrEMBL  Length:147

    Alignment length:152
                                 1                                                                                                                                                  
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145  
         Q9Y9R3_AERPE     - -----MKVRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSKATVKGSGRGAGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGEA 147
               SCOP domains -----d2ns9a1 A:10-156 Hypothetical protein APE2225                                                                                                       SCOP domains
               CATH domains ----2ns9A01 A:9-156  [code=3.30.530.20, no name defined]                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeeee....eeeeeeeeeeeeee...eeeeeeeee...eeeeeeeeeeeeee..eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ns9 A   5 AGVWGLKVRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSKATVKGSGRGAGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGEA 156
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154  


Chain B from PDB  Type:PROTEIN  Length:152
 aligned with Q9Y9R3_AERPE | Q9Y9R3 from UniProtKB/TrEMBL  Length:147

    Alignment length:152
                                    1                                                                                                                                               
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142  
         Q9Y9R3_AERPE     - --------MKVRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSKATVKGSGRGAGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKREL 144
               SCOP domains d2ns9b_ B: Hypothetical protein APE2225                                                                                                                  SCOP domains
               CATH domains -------2ns9B01 B:9-153  [code=3.30.530.20, no name defined]                                                                                              CATH domains
           Pfam domains (1) --------------COXG-2ns9B01 B:16-153                                                                                                                      Pfam domains (1)
           Pfam domains (2) --------------COXG-2ns9B02 B:16-153                                                                                                                      Pfam domains (2)
         Sec.struct. author ..eeeeeeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeeee....eeeeeeeeeeeeee...eeeeeeeee...eeeeeeeeeeeeee..eeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ns9 B   2 RLHAGVWGLKVRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSKATVKGSGRGAGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKREL 153
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2NS9)

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