2NR5 - JenaLib

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Title :   CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION SO2669 FROM SHEWANELLA ONEIDENSIS MR-1

Authors :   B. Nocek, R. Mulligan, T. Peppler, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)

Date :   01 Nov 06 (Deposition) - 12 Dec 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H  (1x)
Biol. Unit 2: A (2x),E (2x),F (2x),H (2x)
Biol. Unit 3: B,C,D,G  (2x)

Keywords :   Psi-2, Mcsg, Mad, Hypothetical Protein, So2669, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Nocek, R. Mulligan, T. Peppler, A. Joachimiak
Structure Of So2669 Protein From Shewanella Onedensis Mr-1, A Singleton Of Unknown Functions.
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN SO2669
	Chains	:	A, B, C, D, F, G, H, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SHEWANELLA ONEIDENSIS
	Organism Taxid	:	211586
	Strain	:	MR-1

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D	E	F	G	H
Biological Unit 2 (2x)	:	A (2x)				E (2x)	F (2x)		H (2x)
Biological Unit 3 (2x)	:		B	C	D			G

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 34)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MPD	6	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	MSE	27	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 34)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MPD	6	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	MSE	27	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MPD	-1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	MSE	-1	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (3, 34)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	MPD	6	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	MSE	26	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG G:7 , ILE G:10	BINDING SITE FOR RESIDUE ACT G 1102
2	AC2	SOFTWARE	ILE D:10 , MSE D:14 , HOH D:4399	BINDING SITE FOR RESIDUE MPD D 4391
3	AC3	SOFTWARE	ARG C:26 , GLN C:27 , ARG D:12 , TRP D:58 , HOH D:4397 , HOH D:4400 , HOH D:4436	BINDING SITE FOR RESIDUE MPD D 4392
4	AC4	SOFTWARE	GLU F:6 , ARG F:7 , ILE F:10 , ALA F:31 , MSE H:1 , MSE H:2	BINDING SITE FOR RESIDUE MPD F 4392
5	AC5	SOFTWARE	MSE C:40 , ARG F:26 , HOH H:4415	BINDING SITE FOR RESIDUE MPD F 4393
6	AC6	SOFTWARE	ARG A:26 , THR A:47 , MSE G:40	BINDING SITE FOR RESIDUE MPD G 4392
7	AC7	SOFTWARE	SER H:13 , MSE H:14 , GLU H:17	BINDING SITE FOR RESIDUE MPD H 4392

(no "SS Bond" information available for 2NR5)

(no "Cis Peptide Bond" information available for 2NR5)

(no "SAP(SNP)/Variant" information available for 2NR5)

(no "PROSITE Motif" information available for 2NR5)

(no "Exon" information available for 2NR5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:60
 aligned with Q8EDS4_SHEON | Q8EDS4 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
          Q8EDS4_SHEON    1 MMTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGESPIA 64
               SCOP domains d2nr5a1 A:1-64 Hypothetical prote    in SO2669                   SCOP domains
               CATH domains --2nr5A00 A:3-64 Ferritin-like                                   CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh.....----hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  2nr5 A  1 mmTKKERIAIQRSmAEEALGKLKAIRQLCGAED----SDmQEVEIWTNRIKELEDWLWGESPIA 64
                            ||      10   |    20        30  |    |40        50        60    
                            ||          14-MSE             33   38 |                        
                            1-MSE                                 40-MSE                    
                             2-MSE

Chain B from PDB  Type:PROTEIN  Length:58
 aligned with Q8EDS4_SHEON | Q8EDS4 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
          Q8EDS4_SHEON    1 MMTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGESPIA 64
               SCOP domains d2nr5b_ B: automated matches                                     SCOP domains
               CATH domains --2nr5B00 B:3-64 Ferritin-like                                   CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh.....------hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  2nr5 B  1 mmTKKERIAIQRSmAEEALGKLKAIRQLCGAED------mQEVEIWTNRIKELEDWLWGESPIA 64
                            ||      10   |    20        30  |     40        50        60    
                            1-MSE       14-MSE             33     40-MSE                    
                             2-MSE

Chain C from PDB  Type:PROTEIN  Length:64
 aligned with Q8EDS4_SHEON | Q8EDS4 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
          Q8EDS4_SHEON    1 MMTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGESPIA 64
               SCOP domains d2nr5c_ C: automated matches                                     SCOP domains
               CATH domains --2nr5C00 C:3-64 Ferritin-like                                   CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  2nr5 C  1 mmTKKERIAIQRSmAEEALGKLKAIRQLCGAEDSSDSSDmQEVEIWTNRIKELEDWLWGESPIA 64
                            ||      10   |    20        30        40        50        60    
                            1-MSE       14-MSE                    40-MSE                    
                             2-MSE

Chain D from PDB  Type:PROTEIN  Length:63
 aligned with Q8EDS4_SHEON | Q8EDS4 from UniProtKB/TrEMBL  Length:64

    Alignment length:63
                                    11        21        31        41        51        61   
          Q8EDS4_SHEON    2 MTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGESPIA 64
               SCOP domains d2nr5d_ D: automated matches                                    SCOP domains
               CATH domains -2nr5D00 D:3-64 Ferritin-like                                   CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  2nr5 D  2 mTKKERIAIQRSmAEEALGKLKAIRQLCGAEDSSDSSDmQEVEIWTNRIKELEDWLWGESPIA 64
                            |       11  |     21        31        41        51        61   
                            2-MSE      14-MSE                    40-MSE

Chain E from PDB  Type:PROTEIN  Length:65
 aligned with Q8EDS4_SHEON | Q8EDS4 from UniProtKB/TrEMBL  Length:64

    Alignment length:67
                               1                                                               
                               |     7        17        27        37        47        57       
          Q8EDS4_SHEON    - ---MMTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGESPIA 64
               SCOP domains d2nr5e_ E: automated matches                                        SCOP domains
               CATH domains 2nr5E00 E:-2-64 Ferritin-like                                       CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh.........--hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2nr5 E -2 SNAmmTKKERIAIQRSmAEEALGKLKAIRQLCGAEDSSDS--mQEVEIWTNRIKELEDWLWGESPIA 64
                               ||    7      | 17        27        37  |     47        57       
                               1-MSE       14-MSE                 37  |                        
                                2-MSE                                40-MSE

Chain F from PDB  Type:PROTEIN  Length:57
 aligned with Q8EDS4_SHEON | Q8EDS4 from UniProtKB/TrEMBL  Length:64

    Alignment length:62
                                    12        22        32        42        52        62  
          Q8EDS4_SHEON    3 TKKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGESPIA 64
               SCOP domains d2nr5f_ F: automated matches                                   SCOP domains
               CATH domains 2nr5F00 F:3-64 Ferritin-like                                   CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh......-----hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                  2nr5 F  3 TKKERIAIQRSmAEEALGKLKAIRQLCGAED-----DmQEVEIWTNRIKELEDWLWGESPIA 64
                                    12 |      22        32|     ||42        52        62  
                                      14-MSE             33    39|                        
                                                                40-MSE

Chain G from PDB  Type:PROTEIN  Length:58
 aligned with Q8EDS4_SHEON | Q8EDS4 from UniProtKB/TrEMBL  Length:64

    Alignment length:62
                                    12        22        32        42        52        62  
          Q8EDS4_SHEON    3 TKKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGESPIA 64
               SCOP domains d2nr5g_ G: automated matches                                   SCOP domains
               CATH domains 2nr5G00 G:3-64 Ferritin-like                                   CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh.....----hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                  2nr5 G  3 TKKERIAIQRSmAEEALGKLKAIRQLCGAE----SSDmQEVEIWTNRIKELEDWLWGESPIA 64
                                    12 |      22        32    |  |42        52        62  
                                      14-MSE            32   37  |                        
                                                                40-MSE

Chain H from PDB  Type:PROTEIN  Length:64
 aligned with Q8EDS4_SHEON | Q8EDS4 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
          Q8EDS4_SHEON    1 MMTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGESPIA 64
               SCOP domains d2nr5h_ H: automated matches                                     SCOP domains
               CATH domains --2nr5H00 H:3-64 Ferritin-like                                   CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  2nr5 H  1 mmTKKERIAIQRSmAEEALGKLKAIRQLCGAEDSSDSSDmQEVEIWTNRIKELEDWLWGESPIA 64
                            ||      10   |    20        30        40        50        60    
                            1-MSE       14-MSE                    40-MSE                    
                             2-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: SO2669-like (2)

Family: SO2669-like (2)

Protein domain: automated matches (1)

Shewanella oneidensis [TaxId: 211586] (1)

1a	d2nr5b_	B:
1b	d2nr5c_	C:
1c	d2nr5d_	D:
1d	d2nr5e_	E:
1e	d2nr5f_	F:
1f	d2nr5g_	G:
1g	d2nr5h_	H:

Protein domain: Hypothetical protein SO2669 (1)

Shewanella oneidensis [TaxId: 70863] (1)

d2nr5a1

A:1-64

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Helix Hairpins (718)

Homologous Superfamily: Ferritin-like (2)

Shewanella oneidensis mr-1. Organism_taxid: 211586. Strain: mr-1. (1)

1a	2nr5E00	E:-2-64
1b	2nr5C00	C:3-64
1c	2nr5D00	D:3-64
1d	2nr5H00	H:3-64
1e	2nr5A00	A:3-64
1f	2nr5G00	G:3-64
1g	2nr5F00	F:3-64
1h	2nr5B00	B:3-64

(no "Pfam Domain" information available for 2NR5)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (Q8EDS4_SHEON | Q8EDS4)

molecular function
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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