2NR4 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF FMN-BOUND PROTEIN MM1853 FROM METHANOSARCINA MAZEI, PFAM DUF447

Authors :   J. B. Bonanno, J. Gilmore, K. T. Bain, C. Lau, S. Wasserman, D. Smith, J. M S. K. Burley, S. C. Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)

Date :   01 Nov 06 (Deposition) - 07 Nov 06 (Release) - 24 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Unknown Function, Flavoprotein, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. B. Bonanno, J. Gilmore, K. T. Bain, C. Lau, S. Wasserman, D. Smith, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Conserved Fmn Bound Hypothetical Protein From Methanosarcina Mazei
To Be Published
PubMed: search

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	MODIFIED PET26
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	MM_1853
	Organism Scientific	:	METHANOSARCINA MAZEI
	Organism Taxid	:	2209

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:31 , ASN A:42 , ALA A:44 , PRO A:45 , ILE A:46 , GLY A:47 , ARG A:58 , LEU A:59 , PHE A:60 , SER A:63 , HIS A:64 , THR A:65 , THR A:90 , THR A:166 , VAL A:167 , HOH A:412 , HOH A:466 , HOH A:487 , HOH A:528 , HOH A:530	BINDING SITE FOR RESIDUE FMN A 401
2	AC2	SOFTWARE	GLU B:31 , ASN B:42 , ALA B:44 , PRO B:45 , ILE B:46 , GLY B:47 , ARG B:58 , LEU B:59 , PHE B:60 , SER B:63 , HIS B:64 , THR B:65 , THR B:90 , LEU B:163 , THR B:166 , VAL B:167 , THR B:170 , HOH B:524 , HOH B:536 , HOH B:557 , HOH B:564 , HOH B:594 , HOH B:595	BINDING SITE FOR RESIDUE FMN B 501

(no "SS Bond" information available for 2NR4)

(no "Cis Peptide Bond" information available for 2NR4)

(no "SAP(SNP)/Variant" information available for 2NR4)

(no "PROSITE Motif" information available for 2NR4)

(no "Exon" information available for 2NR4)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:191
 aligned with Q8PVV4_METMA | Q8PVV4 from UniProtKB/TrEMBL  Length:212

    Alignment length:192
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208  
         Q8PVV4_METMA    19 DLSSFGIREGISEIIASTGFEHPNAAPIGIVMKGERPFVRLFKGSHTWENVLKEKCLASNVVYDPILFVRSTFSDLVPSEFEYVDAGEFKFPVLKEAIAWVVFECINLRNTDQSLVADLVPLNAGFNERNIKELPVPNRGFNAVLEATVHATRYQLTGEEKYLELIRHYESLASKCGGDAEKKAMKLIYEAL 210
               SCOP domains d2nr4a1 A:19-210 Hypothetical protein MM1853                                                                                                                                                     SCOP domains
               CATH domains 2nr4A01 A:19-152 Electron Transport, Fmn-binding Protein; Chain A                                                                     2nr4A02 A:153-210                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh...eeeeeeeee.....eeeeeeeee.....eeeee..hhhhhhhhhhheeeee...hhhhhhhhhhh..hhh.eeee.-....eeee....eeeeeeeeeeeee..eeeeeeeeeeeee.hhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2nr4 A  19 DLSSFGIREGISEIIASTGFEHPNAAPIGIVMKGERPFVRLFKGSHTWENVLKEKCLASNVVYDPILFVRSTFSDLVPSEFEYVD-GEFKFPVLKEAIAWVVFECINLRNTDQSLVADLVPLNAGFNERNIKELPVPNRGFNAVLEATVHATRYQLTGEEKYLELIRHYESLASKCGGDAEKKAMKLIYEAL 210
                                    28        38        48        58        68        78        88        98    | |108       118       128       138       148       158       168       178       188       198       208  
                                                                                                              103 |                                                                                                         
                                                                                                                105

Chain B from PDB  Type:PROTEIN  Length:182
 aligned with Q8PVV4_METMA | Q8PVV4 from UniProtKB/TrEMBL  Length:212

    Alignment length:192
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208  
         Q8PVV4_METMA    19 DLSSFGIREGISEIIASTGFEHPNAAPIGIVMKGERPFVRLFKGSHTWENVLKEKCLASNVVYDPILFVRSTFSDLVPSEFEYVDAGEFKFPVLKEAIAWVVFECINLRNTDQSLVADLVPLNAGFNERNIKELPVPNRGFNAVLEATVHATRYQLTGEEKYLELIRHYESLASKCGGDAEKKAMKLIYEAL 210
               SCOP domains d2nr4b_ B: Hypothetical protein MM1853                                                                                                                                                           SCOP domains
               CATH domains 2nr4B01 B:19-152 Electron Transport, Fmn-binding Protein; Chain A                                                                     2nr4B02 B:153-210                                          CATH domains
           Pfam domains (1) -----------DUF447-2nr4B01 B:30-208                                                                                                                                                            -- Pfam domains (1)
           Pfam domains (2) -----------DUF447-2nr4B02 B:30-208                                                                                                                                                            -- Pfam domains (2)
         Sec.struct. author hhhhhh...eeeeeeeee.....eeeeeeeee.....eeee...hhhhhhhhhhheeeeee..hhhhhhhhhh--.hhh.eeeeee..eeeeee....eeeeeeeeeee..--.eeeeeeeeeeee.hhhh......hhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2nr4 B  19 DLSSFGIREGISEIIASTGFEHPNAAPIGIVMKGERPFVRLFKGSHTWENVLKEKCLASNVVYDPILFVRSTF--LVPSEFEYVDAGEFKFPVLKEAIAWVVFECINLRNT--SLVADLVPLNAGFNERNIKELPVPNRGFNAVLEATVHATRYQ------YLELIRHYESLASKCGGDAEKKAMKLIYEAL 210
                                    28        38        48        58        68        78        88  |  |  98       108       118       128|  |   138       148       158       168    |    - |     188       198       208  
                                                                                                   91 94                                129  |                                      173    180                              
                                                                                                                                           132

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Split barrel-like (99)

Superfamily: FMN-binding split barrel (90)

Family: MTH863-like (3)

Protein domain: Hypothetical protein MM1853 (1)

Methanosarcina mazei [TaxId: 2209] (1)

1a	d2nr4a1	A:19-210
1b	d2nr4b_	B:

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: FMN-binding (25)

Family: DUF447 (2)

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarc (1)

1a	DUF447-2nr4B01	B:30-208
1b	DUF447-2nr4B02	B:30-208

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q8PVV4_METMA | Q8PVV4)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric/Biological Unit
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2iml	RELATED ID: NYSGXRC-10069F RELATED DB: TARGETDB

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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