2NQ2 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   AN INWARD-FACING CONFORMATION OF A PUTATIVE METAL-CHELATE TYPE ABC TRANSPORTER.

Authors :   H. P. Pinkett, A. T. Lee, P. Lum, K. P. Locher, D. C. Rees

Date :   30 Oct 06 (Deposition) - 02 Jan 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Putative Iron Chelatin Abc Transporter, Atp-Binding Protein, Nucleotide Binding Domain, Transmembrane Domain, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. W. Pinkett, A. T. Lee, P. Lum, K. P. Locher, D. C. Rees
An Inward-Facing Conformation Of A Putative Metal-Chelate-Type Abc Transporter.
Science V. 315 373 2007
PubMed-ID: 17158291 | Reference-DOI: 10.1126/SCIENCE.1133488
(for further references see the PDB file header)

Molecule 1 - HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN HI1471
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET19B/PET21B(+)
	Expression System Strain	:	BL21(DE3)/B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	HI_1471
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	727
	Strain	:	KW20 RD

Molecule 2 - HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI1470
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET19B/PET21B(+)
	Expression System Strain	:	BL21(DE3)/B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	HI_1470
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	727
	Strain	:	KW20 RD

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2NQ2)

(no "Site" information available for 2NQ2)

(no "SS Bond" information available for 2NQ2)

Asymmetric/Biological Unit

No.	Residues
1	Asp A:51	-	Pro A:52

(no "SAP(SNP)/Variant" information available for 2NQ2)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ABC_TRANSPORTER_1	PS00211	ABC transporters family signature.	Y1470_HAEIN	129-143	2	C:129-143 D:129-143

(no "Exon" information available for 2NQ2)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:308
 aligned with Y1471_HAEIN | Q57130 from UniProtKB/Swiss-Prot  Length:337

    Alignment length:325
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325     
          Y1471_HAEIN     6 YPKILFGLTLLLVITAVISLGIGRYSLSVPQIGQILWAKATALEIDPVQQQVIFQVRLPRILTALCVGAGLALSGVVLQGIFRNPLVNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKFNQRSLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGLIIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSLSDAEIPISILTALIGAPLFGVLVYKL 330
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2nq2A00 A:6-330 ABC transporter              involved in vitamin B12 uptake, BtuC                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............-------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.----hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nq2 A   6 YPKILFGLTLLLVITAVISLGIGRYSLSVPQI-------------DPVQQQVIFQVRLPRILTALCVGAGLALSGVVLQGIFRNPLVNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFK----SLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGLIIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSLSDAEIPISILTALIGAPLFGVLVYKL 330
                                    15        25        35 |       -     |  55        65        75        85        95       105       115       125       135     |   -|      155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325     
                                                          37            51                                                                                       141  146

Chain B from PDB  Type:PROTEIN  Length:300
 aligned with Y1471_HAEIN | Q57130 from UniProtKB/Swiss-Prot  Length:337

    Alignment length:326
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      
          Y1471_HAEIN     5 SYPKILFGLTLLLVITAVISLGIGRYSLSVPQIGQILWAKATALEIDPVQQQVIFQVRLPRILTALCVGAGLALSGVVLQGIFRNPLVNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKFNQRSLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGLIIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSLSDAEIPISILTALIGAPLFGVLVYKL 330
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2nq2B00 B:5-330 ABC transporte                   r involved in vitamin B12 uptake, BtuC                                                                                                                                                                                                                                                CATH domains
           Pfam domains (1) -----------FecCD-2nq2B01 B:16-                   329                                                                                                                                                                                                                                                                                 - Pfam domains (1)
           Pfam domains (2) -----------FecCD-2nq2B02 B:16-                   329                                                                                                                                                                                                                                                                                 - Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh........-------------------...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.-------hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nq2 B   5 SYPKILFGLTLLLVITAVISLGIGRYSLSV-------------------QQQVIFQVRLPRILTALCVGAGLALSGVVLQGIFRNPLVNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFS-------LLMLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGLIIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSLSDAEIPISILTALIGAPLFGVLVYKL 330
                                    14        24        34         -        54        64        74        84        94       104       114       124       134    |    -  |    154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      
                                                        34                  54                                                                                  139     147

Chain C from PDB  Type:PROTEIN  Length:251
 aligned with Y1470_HAEIN | Q57399 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
          Y1470_HAEIN     2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLPMFEQQAQYKESFFTHFVPLYKTLL 252
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2nq2C00 C:2-252 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee....eeeeeeeeeee...eeeee.....hhhhhhhhhh......eeeeee...eeee..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhh.eeeeee..eeeeeehhhhhhhhhhhhhhh..eeeeeeee..eeeeeeee.hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nq2 C   2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLPMFEQQAQYKESFFTHFVPLYKTLL 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain D from PDB  Type:PROTEIN  Length:248
 aligned with Y1470_HAEIN | Q57399 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
          Y1470_HAEIN     1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLPMFEQQAQYKESFFTHFVPLYKTLL 252
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2nq2D00 D:1-252     P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                     CATH domains
           Pfam domains (1) --------------------------------------------ABC_tran-2nq2D01 D:45-157                                                                                        ----------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------ABC_tran-2nq2D02 D:45-157                                                                                        ----------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ..eeeeeeeee.....----...eeeeee...eeeeee....hhhhhhhhhhh.....eeeeee...eeee..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhh.eeeee....eeeeehhhhhhhhhhhhhhh..eeeeeeee..eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2nq2 D   1 MNKALSVENLGFYYQA----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLPMFEQQAQYKESFFTHFVPLYKTLL 252
                                    10     |   -|       30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
                                          16   21

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2NQ2)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Membrane_trans (3)

Family: FecCD (3)

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (1)

1a	FecCD-2nq2B01	B:16-329
1b	FecCD-2nq2B02	B:16-329

Clan: P-loop_NTPase (1112)

Family: ABC_tran (53)

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (1)

2a	ABC_tran-2nq2D01	D:45-157
2b	ABC_tran-2nq2D02	D:45-157

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Y1471_HAEIN | Q57130)

molecular function
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain C,D (Y1470_HAEIN | Q57399)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016887	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2nq2)

	Sites
(no "Sites" information available for 2nq2)

	Cis Peptide Bonds
		Asp A:51 - Pro A:52	[ RasMol ]

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	Y1471_HAEIN \| Q57130
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	Y1471_HAEIN \| Q57130
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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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