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(-) Description

Title :  SOLUTION STRUCTURE OF PSEUDIN-2 ANALOG (PS-P)
 
Authors :  D. Jeon, J. Kim, A. Shin, Y. Kim
Date :  18 Apr 16  (Deposition) - 26 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Pseudin-2, Analog, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Jeon, J. Kim, E. Lee, J. Bang, Y. Kim
Optimum Balance Between The Cationicity And Structural Component For Bacterial Cell Selectivity And Anti-Inflammatory Activities Of Pseudin-2 And Its Analogs
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PSEUDIN-2
    Chains: A
    Engineered: YES
    Mutation: YES
    Organism Common: SWIMING FROG
    Organism Scientific: PSEUDIS PARADOXA
    Organism Taxid: 43558
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:24
 aligned with PS2_PSEPD | P83189 from UniProtKB/Swiss-Prot  Length:24

    Alignment length:24
                                    10        20    
             PS2_PSEPD    1 GLNALKKVFQGIHEAIKLINNHVQ 24
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                  2ncy A  1 GLNALKKVFQPIHEAIKLINNHVQ 24
                                    10        20
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

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(-) Gene Ontology  (10, 10)

NMR Structure(hide GO term definitions)
Chain A   (PS2_PSEPD | P83189)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0044179    hemolysis in other organism    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.
    GO:0031640    killing of cells of other organism    Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
    GO:0006805    xenobiotic metabolic process    The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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2ncx