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(-) Description

Title :  NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN APOBEC3B
 
Authors :  I. L. Byeon, C. Byeon, A. M. Gronenborn
Date :  09 Mar 16  (Deposition) - 01 Jun 16  (Release) - 29 Jun 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
NMR Structure *:  A  (1x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. J. Byeon, C. H. Byeon, T. Wu, M. Mitra, D. Singer, J. G. Levin, A. M. Gronenborn
Nuclear Magnetic Resonance Structure Of The Apobec3B Catalytic Domain: Structural Basis For Substrate Binding An Dna Deaminase Activity.
Biochemistry V. 55 2944 2016
PubMed-ID: 27163633  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00382

(-) Compounds

Molecule 1 - DNA DC->DU-EDITING ENZYME APOBEC-3B
    Chains: A
    EC Number: 3.5.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: DE3
    Expression System Taxid: 469008
    Expression System Vector: PET21
    Fragment: RESIDUES 187-382
    Gene: APOBEC3B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: A3B, PHORBOLIN-1-RELATED PROTEIN, PHORBOLIN-2/3

 Structural Features

(-) Chains, Units

  1
NMR Structure (30x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:253 , CYS A:284 , CYS A:289BINDING SITE FOR RESIDUE ZN A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NBQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NBQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NBQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NBQ)

(-) Exons   (0, 0)

(no "Exon" information available for 2NBQ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhh............eeeeeeeeee..eeee.....eeee..............hhhhhhhhhhhh.......eeeeeee.........hhhhhhhhhhh...eeeeeee.........hhhhhhhhhhh..eeee..hhhhhhhhhhh............hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nbq A 186 MEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN 382
                                   195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2NBQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2NBQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2NBQ)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ABC3B_HUMAN | Q9UH17: 5cqd 5cqh 5cqi 5cqk 5td5 5tkm

(-) Related Entries Specified in the PDB File

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