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(-) Description

Title :  ZIPCODE-BINDING-PROTEIN-1 KH3(DD)KH4 DOMAINS IN COMPLEX WITH THE KH4 RNA TARGET
 
Authors :  G. Nicastro, A. Ramos, A. Candel, D. Hollingworth
Date :  21 Oct 15  (Deposition) - 25 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (12x)
NMR Structure *:  A,B  (1x)
Keywords :  Kh Domain, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Nicastro, A. Ramos, A. Candel, D. Hollingworth
Zipcode-Binding-Protein-1 Kh3(Dd)Kh4 Domains In Complex Wit The Rna Target Ucggacu
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INSULIN-LIKE GROWTH FACTOR 2 MRNA-BINDING PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KH DOMAIN (UNP RESIDUES 387-573)
    Gene: IGF2BP1, VICKZ1, ZBP1
    Mutation: YES
    Organism Common: BANTAM,CHICKENS
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: IGF2 MRNA-BINDING PROTEIN 1, IMP-1, IGF-II MRNA-BINDING PROTEIN 1, VICKZ FAMILY MEMBER 1, ZIP-CODE BINDING POLYPEPTIDE, ZIPCODE-BINDING PROTEIN 1, ZBP-1
 
Molecule 2 - RNA (5'-R(P*UP*CP*GP*GP*AP*CP*U)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (12x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N8M)

(-) Sites  (0, 0)

(no "Site" information available for 2N8M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N8M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N8M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N8M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N8M)

(-) Exons   (0, 0)

(no "Exon" information available for 2N8M)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eeeeeeehhhhhhhhhh..hhhhhhhhhh..eeee.........eeeeeee.hhhhhhhhhhhhhhhhhhh...........eeeeeee..hhhhhh...hhhhhhhhhh...eee...........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2n8m A   1 GAMGPSSVSGAAPFSSFMPPEQETVHVFIPAQAVGAIIGDDGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENEQVIVKIIGHFYASQMAQRKIRDILAQVKQQHQKGQSGQLQA 191
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190 


Chain B from PDB  Type:RNA  Length:7
                                       
                 2n8m B   1 UCGGACU   7
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N8M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N8M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N8M)

(-) Gene Ontology  (26, 26)

NMR Structure(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        IF2B1_CHICK | O42254: 2n8l

(-) Related Entries Specified in the PDB File

2n8l