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(-) Description

Title :  SOLUTION STRUCTURE OF ZMP1, A ZINC-DEPENDENT METALLOPROTEASE SECRETED BY CLOSTRIDIUM DIFFICILE
 
Authors :  L. Banci, F. Cantini, M. Scarselli, J. T. Rubino, M. Martinelli
Date :  24 Aug 15  (Deposition) - 13 Jan 16  (Release) - 06 Apr 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Metalloprotease, Vaccine, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. T. Rubino, M. Martinelli, F. Cantini, A. Castagnetti, R. Leuzzi, L. Banci, M. Scarselli
Structural Characterization Of Zinc-Bound Zmp1, A Zinc-Dependent Metalloprotease Secreted By Clostridium Difficile.
J. Biol. Inorg. Chem. V. 21 185 2016
PubMed-ID: 26711661  |  Reference-DOI: 10.1007/S00775-015-1319-6

(-) Compounds

Molecule 1 - ZINC METALLOPROTEASE ZMP1
    Chains: A
    EC Number: 3.4.24.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: T7
    Expression System Taxid: 562
    Expression System Vector: PET15/TEV
    Gene: ZMP1, CD630_28300
    Organism Scientific: PEPTOCLOSTRIDIUM DIFFICILE 630
    Organism Taxid: 272563
    Strain: 630

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:142 , HIS A:146 , TYR A:178 , GLU A:185 , HOH A:302BINDING SITE FOR RESIDUE ZN A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N6J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N6J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N6J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N6J)

(-) Exons   (0, 0)

(no "Exon" information available for 2N6J)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.ee......hhhhhhhhhhhhhh.hhhhhhhhhhh...eeee..hhhhhhhhh...............hhhhh.ee....eeee.............hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2n6j A  26 GDSTTIQQNKDTLSQIVVFPTGNYDKNEANAMVNRLANIDGKYLNALKQNNLKIKLLSGKLTDEKEYAYLKGVVPKGWEGTGKTWDDVPGLGGSTVALRIGFSNKGKGHDAINLELHETAHAIDHIVLNDISKSAQFKQIFAKEGRSLGNVNYLGVYPEEFFAESFAYYYLNQDTNSKLKSACPQTYSFLQNLAK 220
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N6J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N6J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N6J)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)

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  ZMP1_PEPD6 | Q183R7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZMP1_PEPD6 | Q183R7: 5a0p 5a0r 5a0s 5a0x

(-) Related Entries Specified in the PDB File

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