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(-) Description

Title :  SOLUTION STRUCTURE OF OVIS ARIES PRP
 
Authors :  C. Munoz, A. Egalon, V. Beringue, H. Rezaei, M. Dron, C. Sizun
Date :  06 Jul 15  (Deposition) - 25 May 16  (Release) - 17 Aug 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Scrapie, Cellular Form, Transmissible Spongiform Encephalopathy, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Munoz-Montesino, C. Sizun, M. Moudjou, L. Herzog, F. Reine, J. Chapuis, D. Ciric, A. Igel-Egalon, H. Laude, V. Beringue, H. Rezaei M. Dron
Generating Bona Fide Mammalian Prions With Internal Deletions.
J. Virol. V. 90 6963 2016
PubMed-ID: 27226369  |  Reference-DOI: 10.1128/JVI.00555-16

(-) Compounds

Molecule 1 - MAJOR PRION PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET22B
    Fragment: PRP RESIDUES 103-234
    Gene: PRNP PRION PROTEIN, PRP
    Organism Common: DOMESTIC SHEEP,LAMBS,WILD SHEEP
    Organism Scientific: OVIS ARIES
    Organism Taxid: 9940
    Variant: VRQ

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N53)

(-) Sites  (0, 0)

(no "Site" information available for 2N53)

(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:182 -A:217

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N53)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N53)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N53)

(-) Exons   (0, 0)

(no "Exon" information available for 2N53)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhh......hhhhhh..................hhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2n53 A  92 SGLVPRGSHMSNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSVMSRPLIHFGNDYEDRYYRENMYRYPNQVYYRPVDQYSNQNNFVHDCVNITVKQHTVTTTTKGENFTETDIKIMERVVEQMCITQYQRESQAYYQRGAS 234
                                   101       111       121       131       141       151       161       171       181       191       201       211       221       231
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N53)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N53)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N53)

(-) Gene Ontology  (30, 36)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRIO_SHEEP | P23907: 1g04 1m25 1s4t 1tpx 1tqb 1tqc 1uw3 1xyu 1y2s 2ktm 2mv8 2mv9 2rmv 2rmw
        Q712V9_SHEEP | Q712V9: 2mv8 2mv9

(-) Related Entries Specified in the PDB File

2mv8 SOLUTION STRUCTURE OF OVIS ARIES PRP WITH MUTATION DELTA190-197
2mv9 SOLUTION STRUCTURE OF OVIS ARIES PRP WITH MUTATION DELTA193-196 RELATED ID: 25250 RELATED DB: BMRB SOLUTION STRUCTURE OF OVIS ARIES PRP WITH MUTATION DELTA190-197 RELATED ID: 25251 RELATED DB: BMRB SOLUTION STRUCTURE OF OVIS ARIES PRP WITH MUTATION DELTA193-196 RELATED ID: 25692 RELATED DB: BMRB