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(-) Description

Title :  SOLUTION STRUCTURE OF SDS3 IN COMPLEX WITH SIN3A
 
Authors :  M. Clark, I. Radhakrishnan
Date :  08 May 15  (Deposition) - 15 Jul 15  (Release) - 20 Jan 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Transcription Repression, Corepressor Complex, Histone Deacetylase Complex, Transcription, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Clark, R. Marcum, R. Graveline, C. W. Chan, T. Xie, Z. Chen, Y. Ding Y. Zhang, A. Mondragon, G. David, I. Radhakrishnan
Structural Insights Into The Assembly Of The Histone Deacetylase-Associated Sin3L/Rpd3L Corepressor Complex.
Proc. Natl. Acad. Sci. Usa V. 112 E3669 2015
PubMed-ID: 26124119  |  Reference-DOI: 10.1073/PNAS.1504021112

(-) Compounds

Molecule 1 - SIN3 HISTONE DEACETYLASE COREPRESSOR COMPLEX COMPONENT SDS3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 205-228
    Gene: SUDS3, SDS3
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: SUPPRESSOR OF DEFECTIVE SILENCING 3 PROTEIN HOMOLOG
 
Molecule 2 - PAIRED AMPHIPATHIC HELIX PROTEIN SIN3A
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 608-729
    Gene: SIN3A, KIAA4126
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: HISTONE DEACETYLASE COMPLEX SUBUNIT SIN3A, TRANSCRIPTIONAL COREPRESSOR SIN3A

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N2H)

(-) Sites  (0, 0)

(no "Site" information available for 2N2H)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N2H)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N2H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N2H)

(-) Exons   (0, 0)

(no "Exon" information available for 2N2H)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:27
                                                           
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 2n2h A 202 SNAAQLNYLLTDEQIMEDLRTLNKLKS 228
                                   211       221       


Chain B from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2n2h B 605 SNAEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNEKYYLKS 729
                                   614       624       634       644       654       664       674       684       694       704       714       724
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N2H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N2H)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (60, 70)

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  2n2h
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  SDS3_MOUSE | Q8BR65
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  SIN3A_MOUSE | Q60520
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SDS3_MOUSE | Q8BR65: 4zqa
        SIN3A_MOUSE | Q60520: 1g1e 1s5q 1s5r 2l9s 2ld7 2rmr 2rms

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2N2H)