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(-) Description

Title :  SOLUTION STRUCTURE OF BUD31P
 
Authors :  A. M. Van Roon, J. Yang, D. Mathieu, W. Bermel, K. Nagai, D. Neuhaus
Date :  19 Jan 15  (Deposition) - 11 Mar 15  (Release) - 22 Apr 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (35x)
NMR Structure *:  A  (1x)
Keywords :  Zinc Cluster, Splicing Protein, Zinc Finger, Splicing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Van Roon, J. C. Yang, D. Mathieu, W. Bermel, K. Nagai, D. Neuhaus
(113) Cd Nmr Experiments Reveal An Unusual Metal Cluster In The Solution Structure Of The Yeast Splicing Protein Bud31P
Angew. Chem. Int. Ed. Engl. V. 54 4861 2015
PubMed-ID: 25703931  |  Reference-DOI: 10.1002/ANIE.201412210

(-) Compounds

Molecule 1 - PRE-MRNA-SPLICING FACTOR BUD31
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: RIL CODONPLUS
    Expression System Vector: PRK172
    Gene: BUD31, CWC14, YCR063W, YCR63W, YCR903
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Other Details: PROTEIN WAS EXPRESSED AS AN N-TERMINAL GLUTATHIONE S TRANSFERASE FUSION PROTEIN
    Strain: ATCC 204508 / S288C
    Synonym: BUD SITE SELECTION PROTEIN 31, COMPLEXED WITH CEF1 PROTEIN 14

 Structural Features

(-) Chains, Units

  1
NMR Structure (35x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

NMR Structure (1, 3)
No.NameCountTypeFull Name
1ZN3Ligand/IonZINC ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (3, 3)

NMR Structure (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:104 , CYS A:105 , CYS A:108 , CYS A:148BINDING SITE FOR RESIDUE ZN A 1000
2AC2SOFTWARECYS A:104 , CYS A:122 , CYS A:150 , CYS A:153BINDING SITE FOR RESIDUE ZN A 1001
3AC3SOFTWARECYS A:108 , CYS A:120 , CYS A:122 , CYS A:145BINDING SITE FOR RESIDUE ZN A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MY1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MY1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MY1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MY1)

(-) Exons   (0, 0)

(no "Exon" information available for 2MY1)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhh...........................hhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2my1 A  -1 GGSPRIKTRRSKPAPDGFEKIKPTLTDFEIQLRDAQKDKSSKLAAKSNEQLWEIMQLHHQRSRYIYTLYYKRKAISKDLYDWLIKEKYADKLLIAKWRKTGYEKLCCLRCIQKNETNNGSTCICRVPRAQLEEEARKKGTQVSFHQCVHCGCRGCASTD 157
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MY1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MY1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MY1)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)

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  2my1
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  BUD31_YEAST | P25337
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BUD31_YEAST | P25337: 5gm6 5gmk 5lj3 5lj5 5lqw 5mps 5mq0 5wsg

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2MY1)