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(-) Description

Title :  FULL-LENGTH SOLUTION STRUCTURE OF YTVA, A LOV-PHOTORECEPTOR PROTEIN AND REGULATOR OF BACTERIAL STRESS RESPONSE
 
Authors :  M. Jurk, B. Bardiaux, P. Schmieder
Date :  07 Nov 14  (Deposition) - 25 May 16  (Release) - 01 Jun 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Photoreceptor, Lov/Pas, Stressosome, Rsb, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Jurk, M. Dorn, J. Reichenwallner, B. Bardiaux, D. Hinderberger, P. Schmieder
Solution Structure Of Ytva From Bacillus Subtilis Provides Insight Into Activation Mechanism And Regulation Of Bacterial Stress Response.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BLUE-LIGHT PHOTORECEPTOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30EK/LIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-261
    Gene: PFYP, YTVA, BSU30340
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: PHOTOACTIVE FLAVO-YELLOW PROTEIN, PHOTOTROPIN HOMOLOG

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
NMR Structure * (1, 2)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:61 , CYS A:62 , ARG A:63 , GLN A:66 , ASN A:94 , ASN A:104 , LEU A:106 , VAL A:120 , GLY A:121 , GLN A:123BINDING SITE FOR RESIDUE FMN A 900
2AC2SOFTWAREASN B:61 , CYS B:62 , ARG B:63 , GLN B:66 , ASN B:94 , ASN B:104 , LEU B:106 , VAL B:120 , GLY B:121 , GLN B:123BINDING SITE FOR RESIDUE FMN B 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MWG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MWG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MWG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MWG)

(-) Exons   (0, 0)

(no "Exon" information available for 2MWG)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.hhhhhhhhhhhhhhh..eeeee........eee.hhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhh...eeeeeeee.....eeeeeeee..eee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhh........eee.......hhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhh.ee.hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mwg A   1 GASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISALPLVGNLTEERFNSIVCTLTNILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDANFSSLKTYSNVKDAVKVLPIM 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.hhhhhhhhhhhhhhh..eeeee........eee.hhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhh...eeeeeeee.....eeeeeeee..eee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhh........eee..........hhhhhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhh.ee.hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mwg B   1 GASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISALPLVGNLTEERFNSIVCTLTNILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDANFSSLKTYSNVKDAVKVLPIM 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MWG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MWG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MWG)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)

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 Related Entries

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        PHOT_BACSU | O34627: 1ium 2pr5 2pr6 4gcz

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