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(-) Description

Title :  SOLUTION NMR STRUCTURE OF DOT1L IN COMPLEX WITH AF9 (DOT1L-AF9)
 
Authors :  A. Kuntimaddi, J. H. Bushweller
Date :  24 Sep 14  (Deposition) - 22 Apr 15  (Release) - 17 Jun 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Mixed Lineage Leukemia, Leukemia, Protein Binding-Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kuntimaddi, N. J. Achille, J. Thorpe, A. A. Lokken, R. Singh, C. S. Hemenway, M. Adli, N. J. Zeleznik-Le, J. H. Bushweller
Degree Of Recruitment Of Dot1L To Mll-Af9 Defines Level Of H3K79 Di- And Tri-Methylation On Target Genes And Transformation Potential.
Cell Rep V. 11 808 2015
PubMed-ID: 25921540  |  Reference-DOI: 10.1016/J.CELREP.2015.04.004

(-) Compounds

Molecule 1 - PROTEIN AF-9
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA 2 DE3
    Expression System Taxid: 562
    Expression System Vector: PETDUET-1
    Fragment: UNP RESIDUES 500-568
    Gene: AF9, MLLT3, YEATS3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PETDUET-1
    Synonym: ALL1-FUSED GENE FROM CHROMOSOME 9 PROTEIN, MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA TRANSLOCATED TO CHROMOSOME 3 PROTEIN, YEATS DOMAIN-CONTAINING PROTEIN 3
 
Molecule 2 - HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC
    Chains: B
    EC Number: 2.1.1.43
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA 2 DE3
    Expression System Taxid: 562
    Expression System Vector: PETDUET-1
    Fragment: UNP RESIDUES 877-900
    Gene: DOT1L, KIAA1814, KMT4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PETDUET-1
    Synonym: DOT1-LIKE PROTEIN, HISTONE H3-K79 METHYLTRANSFERASE, H3-K79- HMTASE, LYSINE N-METHYLTRANSFERASE 4

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MV7)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:69
                                                                                                     
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..eee..eeeee.hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 2mv7 A 500 DKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS 568
                                   509       519       529       539       549       559         


Chain B from PDB  Type:PROTEIN  Length:25
                                                         
               SCOP domains ------------------------- SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ....eee.................. Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                 2mv7 B 876 TNKLPVSIPLASVVLPSRAERARST 900
                                   885       895
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MV7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MV7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MV7)

(-) Gene Ontology  (25, 27)

NMR Structure(hide GO term definitions)

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  2mv7
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  AF9_HUMAN | P42568
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  DOT1L_HUMAN | Q8TEK3
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  2.1.1.43
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AF9_HUMAN | P42568: 2lm0 2n4q 2ndf 2ndg 4tmp 5hjb 5hjd
        DOT1L_HUMAN | Q8TEK3: 1nw3 3qow 3qox 3sr4 3sx0 3uwp 4ek9 4ekg 4eki 4eqz 4er0 4er3 4er5 4er6 4er7 4hra 4wvl 5drt 5dry 5dsx 5dt2 5dtm 5dtq 5dtr 5juw 5mvs 5mw3 5mw4

(-) Related Entries Specified in the PDB File

2lm0 NMR SOLUTION STRUCTURE OF THE AF4-AF9 COMPLEX RELATED ID: 19516 RELATED DB: BMRB