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(-) Description

Title :  MAJOR SPERM PROTEIN, BETA ISOFORM, ENGINEERED C59S/T90C MUTANT, PUTATIVE SUBFILAMENT STRUCTURE, PH 8.5
 
Authors :  T. L. Bullock, A. J. Mccoy, M. Stewart
Date :  19 Dec 97  (Deposition) - 15 Apr 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Cytoskeletal Protein, Nematode Sperm Cell Motility Protein, Filamentous Protein Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. L. Bullock, A. J. Mccoy, H. M. Kent, T. M. Roberts, M. Stewart
Structural Basis For Amoeboid Motility In Nematode Sperm.
Nat. Struct. Biol. V. 5 184 1998
PubMed-ID: 9501910  |  Reference-DOI: 10.1038/NSB0398-184
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MAJOR SPERM PROTEIN
    CellSPERM CELL
    Cell LineBL21
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System GeneBETA MSP C59S/T90C
    Expression System PlasmidPET11D
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    GeneBETA MSP C59S/T90C
    MutationYES
    Organism CommonPIG ROUNDWORM
    Organism ScientificASCARIS SUUM
    Organism Taxid6253
    Other DetailsBETA ISOFORM
    StrainBL21 (DE3)
    SynonymMSP

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MSP)

(-) Sites  (0, 0)

(no "Site" information available for 2MSP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MSP)

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Gln A:12 -Pro A:13
2Ala A:21 -Pro A:22
3Asp A:56 -Pro A:57
4Gln B:12 -Pro B:13
5Ala B:21 -Pro B:22
6Asp B:56 -Pro B:57
7Gln C:12 -Pro C:13
8Ala C:21 -Pro C:22
9Asp C:56 -Pro C:57
10Gln D:12 -Pro D:13
11Ala D:21 -Pro D:22
12Asp D:56 -Pro D:57
13Gln E:12 -Pro E:13
14Ala E:21 -Pro E:22
15Asp E:56 -Pro E:57
16Gln F:12 -Pro F:13
17Ala F:21 -Pro F:22
18Asp F:56 -Pro F:57
19Gln G:12 -Pro G:13
20Ala G:21 -Pro G:22
21Asp G:56 -Pro G:57
22Gln H:12 -Pro H:13
23Ala H:21 -Pro H:22
24Asp H:56 -Pro H:57

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MSP)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MSPPS50202 Major sperm protein (MSP) domain profile.MSP2_ASCSU9-126
 
 
 
 
 
 
 
  8A:8-125
B:8-125
C:8-125
D:8-125
E:8-125
F:8-125
G:8-125
H:8-125
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MSPPS50202 Major sperm protein (MSP) domain profile.MSP2_ASCSU9-126
 
 
 
 
 
 
 
  4A:8-125
B:8-125
C:8-125
D:8-125
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MSPPS50202 Major sperm protein (MSP) domain profile.MSP2_ASCSU9-126
 
 
 
 
 
 
 
  4-
-
-
-
E:8-125
F:8-125
G:8-125
H:8-125

(-) Exons   (0, 0)

(no "Exon" information available for 2MSP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:124
 aligned with MSP2_ASCSU | P27440 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP2_ASCSU     4 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2mspa_ A: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2mspA00 A:3-126 PapD-like                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeee......eeeeeeeee.....eeeeeee...........eeee....eeeeeeee.............eeeeeeee..........hhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: A:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2msp A   3 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLNNDRICIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122    

Chain B from PDB  Type:PROTEIN  Length:124
 aligned with MSP2_ASCSU | P27440 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP2_ASCSU     4 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2mspb_ B: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2mspB00 B:3-126 PapD-like                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeee......eeeeeeeee.....eeeeeee...........eeee....eeeeeeee.............eeeeeeee..........hhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: B:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2msp B   3 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLNNDRICIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122    

Chain C from PDB  Type:PROTEIN  Length:124
 aligned with MSP2_ASCSU | P27440 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP2_ASCSU     4 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2mspc_ C: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2mspC00 C:3-126 PapD-like                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeee......eeeeeeeee.....eeeeeee...........eeee....eeeeeeee.............eeeeeeee..........hhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: C:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2msp C   3 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLNNDRICIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122    

Chain D from PDB  Type:PROTEIN  Length:124
 aligned with MSP2_ASCSU | P27440 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP2_ASCSU     4 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2mspd_ D: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2mspD00 D:3-126 PapD-like                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeee......eeeeeeeee.....eeeeeee...........eeee....eeeeeeee.............eeeeeeee..........hhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: D:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2msp D   3 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLNNDRICIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122    

Chain E from PDB  Type:PROTEIN  Length:124
 aligned with MSP2_ASCSU | P27440 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP2_ASCSU     4 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2mspe_ E: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2mspE00 E:3-126 PapD-like                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeee......eeeeeeeee.....eeeeeee...........eeee....eeeeeeee....hhh......eeeeeeee..........hhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: E:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2msp E   3 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLNNDRICIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122    

Chain F from PDB  Type:PROTEIN  Length:124
 aligned with MSP2_ASCSU | P27440 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP2_ASCSU     4 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2mspf_ F: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2mspF00 F:3-126 PapD-like                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeee......eeeeeeeee.....eeeeeee...........eeee....eeeeeeee.............eeeeeeee..........hhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: F:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2msp F   3 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLNNDRICIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122    

Chain G from PDB  Type:PROTEIN  Length:124
 aligned with MSP2_ASCSU | P27440 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP2_ASCSU     4 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2mspg_ G: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2mspG00 G:3-126 PapD-like                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeee......eeeeeeeee.....eeeeeee...........eeee....eeeeeeee.............eeeeeeee..........hhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: G:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2msp G   3 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLNNDRICIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122    

Chain H from PDB  Type:PROTEIN  Length:124
 aligned with MSP2_ASCSU | P27440 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP2_ASCSU     4 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPCGVLDPKESVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2msph_ H: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2mspH00 H:3-126 PapD-like                                                                                                    CATH domains
           Pfam domains (1) -----Motile_Sperm-2mspH01 H:8-113                                                                              ------------- Pfam domains (1)
           Pfam domains (2) -----Motile_Sperm-2mspH02 H:8-113                                                                              ------------- Pfam domains (2)
           Pfam domains (3) -----Motile_Sperm-2mspH03 H:8-113                                                                              ------------- Pfam domains (3)
           Pfam domains (4) -----Motile_Sperm-2mspH04 H:8-113                                                                              ------------- Pfam domains (4)
           Pfam domains (5) -----Motile_Sperm-2mspH05 H:8-113                                                                              ------------- Pfam domains (5)
           Pfam domains (6) -----Motile_Sperm-2mspH06 H:8-113                                                                              ------------- Pfam domains (6)
           Pfam domains (7) -----Motile_Sperm-2mspH07 H:8-113                                                                              ------------- Pfam domains (7)
           Pfam domains (8) -----Motile_Sperm-2mspH08 H:8-113                                                                              ------------- Pfam domains (8)
         Sec.struct. author ......eeee...eeeee......eeeeeeeee.....eeeeeee...........eeee....eeeeeeee.............eeeeeeee..........hhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: H:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2msp H   3 SVPPGDINTQPGSKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLNNDRICIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
1a2mspA00A:3-126
1b2mspC00C:3-126
1c2mspD00D:3-126
1d2mspE00E:3-126
1e2mspF00F:3-126
1f2mspG00G:3-126
1g2mspH00H:3-126
1h2mspB00B:3-126

(-) Pfam Domains  (1, 8)

Asymmetric Unit

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (MSP2_ASCSU | P27440)
cellular component
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0031143    pseudopodium    A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding.

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