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(-) Description

Title :  NMR STRUCTURE AND 1H, 13C AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR HIGH MOBILITY GROUP PROTEIN FROM PLASMODIUM FALCIPARUM 3D7.
 
Authors :  C. Tang, R. Barnwal, G. Varani
Date :  02 Jul 14  (Deposition) - 16 Jul 14  (Release) - 16 Jul 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Pathogenesis, Virulence, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Tang, R. Barnwal, G. Varani
Nmr Structure And 1H, 13C And 15N Chemical Shift Assignment For High Mobility Group Protein From Plasmodium Falciparum 3D7.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HIGH MOBILITY GROUP PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: AVA VECTOR
    Fragment: UNP RESIDUES 17-99
    Gene: PFHMGB2, MAL8P1.72
    Organism Scientific: PLASMODIUM FALCIPARUM 3D7
    Organism Taxid: 36329

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:92
 aligned with Q8IB14_PLAF7 | Q8IB14 from UniProtKB/TrEMBL  Length:99

    Alignment length:99
                                    10        20        30        40        50        60        70        80        90         
          Q8IB14_PLAF7    1 MASKSQKKVLKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKNQE 99
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-------..................hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  2mrc A  1 MAHH-------HHHHMKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEYRKKNQE 92
                               |     - |      13        23        33        43        53        63        73        83         
                               4       5
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 Classification and Annotation

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(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (Q8IB14_PLAF7 | Q8IB14)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008301    DNA binding, bending    The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
biological process
    GO:0002720    positive regulation of cytokine production involved in immune response    Any process that activates or increases the frequency, rate, or extent of cytokine production that contributes to an immune response.
    GO:0006359    regulation of transcription from RNA polymerase III promoter    Any process that modulates the frequency, rate or extent of transcription from an RNA ploymerase III promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0005694    chromosome    A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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