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(-) Description

Title :  3D NMR STRUCTURE OF THE CYTOPLASMIC RHODANESE DOMAIN OF THE INNER MEMBRANE PROTEIN YGAP FROM ESCHERICHIA COLI
 
Authors :  C. Eichmann, C. Tzitzilonis, E. Bordignon, I. Maslennikov, S. Choe, R.
Date :  26 Apr 14  (Deposition) - 25 Jun 14  (Release) - 17 Sep 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Rhodanese Domain, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Eichmann, C. Tzitzilonis, E. Bordignon, I. Maslennikov, S. Choe, R. Riek
Solution Nmr Structure And Functional Analysis Of The Integral Membrane Protein Ygap From Escherichia Coli.
J. Biol. Chem. V. 289 23482 2014
PubMed-ID: 24958726  |  Reference-DOI: 10.1074/JBC.M114.571935

(-) Compounds

Molecule 1 - INNER MEMBRANE PROTEIN YGAP
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3) PLYSS STAR
    Expression System Taxid: 562
    Expression System Vector: PET3A-LIC
    Gene: B2668, JW2643, YGAP, YGAP B2668 JW2643
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MOI)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MOI)

(-) Cis Peptide Bonds  (1, 10)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10Ala A:81 -Pro A:82

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MOI)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.YGAP_ECOLI15-105  1A:14-104
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.YGAP_ECOLI15-105  1A:14-104

(-) Exons   (0, 0)

(no "Exon" information available for 2MOI)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
 aligned with YGAP_ECOLI | P55734 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:108
                                    11        21        31        41        51        61        71        81        91       101        
           YGAP_ECOLI     2 ALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQ 109
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhh....eeee...hhhhhhh.....ee.hhhhhh............eee.......hhhhhhhhhhhh...........hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------RHODANESE_3  PDB: A:14-104 UniProt: 15-105                                                 ---- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2moi A   1 ALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVNKSQ 108
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MOI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MOI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MOI)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (YGAP_ECOLI | P55734)
molecular function
    GO:0004792    thiosulfate sulfurtransferase activity    Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  Cis Peptide Bonds
    Ala A:81 - Pro A:82   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YGAP_ECOLI | P55734: 2mol 2mpn 5hbl 5hbo 5hbp 5hbq 5hpa 5lam 5lao

(-) Related Entries Specified in the PDB File

2moj
2mol RELATED ID: 19943 RELATED DB: BMRB