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(-) Description

Title :  SOLUTION STRUCTURE OF THE APO FORM OF HUMAN GLUTAREDOXIN 5
 
Authors :  L. Banci, D. Brancaccio, S. Ciofi-Baffoni, R. Del Conte, R. Gadepalli M. Mikolajczyk, S. Neri, M. Piccioli, J. Winkelmann
Date :  25 Mar 14  (Deposition) - 16 Apr 14  (Release) - 21 May 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Monothiol Glutaredoxins, Iron-Sulfur Protein Biogenesis, [2Fe-2S] Cluster Protein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Banci, D. Brancaccio, S. Ciofi-Baffoni, R. Del Conte, R. Gadepalli, M. Mikolajczyk, S. Neri, M. Piccioli, J. Winkelmann
[2Fe-2S] Cluster Transfer In Iron-Sulfur Protein Biogenesis
Proc. Natl. Acad. Sci. Usa V. 111 6203 2014
PubMed-ID: 24733926  |  Reference-DOI: 10.1073/PNAS.1400102111

(-) Compounds

Molecule 1 - GLUTAREDOXIN-RELATED PROTEIN 5, MITOCHONDRIAL
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)GOLD
    Expression System Taxid469008
    Expression System VectorPETG-20A
    FragmentUNP RESIDUES 35-150
    GeneGLRX5, C14ORF87
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMONOTHIOL GLUTAREDOXIN-5

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MMZ)

(-) Sites  (0, 0)

(no "Site" information available for 2MMZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MMZ)

(-) Cis Peptide Bonds  (1, 1)

NMR Structure
No.Residues
1Gly A:68 -Phe A:69

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (3, 3)

NMR Structure (3, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_074550K101QGLRX5_HUMANDisease (SIDBA3)869312752AK101Q
2UniProtVAR_026125A146TGLRX5_HUMANPolymorphism11628901AA146T
3UniProtVAR_074551L148SGLRX5_HUMANDisease (SIDBA3)765487627AL148S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
NMR Structure * (3, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_074550K101QGLRX5_HUMANDisease (SIDBA3)869312752AK101Q
2UniProtVAR_026125A146TGLRX5_HUMANPolymorphism11628901AA146T
3UniProtVAR_074551L148SGLRX5_HUMANDisease (SIDBA3)765487627AL148S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLUTAREDOXIN_2PS51354 Glutaredoxin domain profile.GLRX5_HUMAN42-145  1A:42-145
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLUTAREDOXIN_2PS51354 Glutaredoxin domain profile.GLRX5_HUMAN42-145  1A:42-145

(-) Exons   (0, 0)

(no "Exon" information available for 2MMZ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:121
 aligned with GLRX5_HUMAN | Q86SX6 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:148
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142        
          GLRX5_HUMAN     3 GSLGRAAAALLRWGRGAGGGGLWGPGVRAAGSGAGGGGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIHSALLDE 150
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....---------------------------......hhhhhhhhhh...eeeee..........hhhhhhhhhhhh.....eeee...hhhhhhhhhhhhh.....eeee..eeeeehhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------Q--------------------------------------------T-S-- SAPs(SNPs)
                    PROSITE ---------------------------------------GLUTAREDOXIN_2  PDB: A:42-145 UniProt: 42-145                                                           ----- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mmz A   1 GSFTM---------------------------GAGGGGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIHSALLDE 150
                                |    -         -         -  |     42        52        62        72        82        92       102       112       122       132       142        
                                5                          35                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MMZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MMZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MMZ)

(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)
Chain A   (GLRX5_HUMAN | Q86SX6)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0015035    protein disulfide oxidoreductase activity    Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0030097    hemopoiesis    The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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    Gly A:68 - Phe A:69   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        GLRX5_HUMAN | Q86SX62wul

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