Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)NMR Structure - model 1
(-)NMR Structure - all models
collapse expand < >
Image NMR Structure - model 1
NMR Structure - model 1  (Jmol Viewer)
Image NMR Structure - all models
NMR Structure - all models  (Jmol Viewer)

(-) Description

Title :  STF76 FROM THE SULFOLOBUS ISLANDICUS PLASMID-VIRUS PSSVX
 
Authors :  B. Farina, L. Russo, R. Fattorusso
Date :  27 Feb 14  (Deposition) - 12 Mar 14  (Release) - 04 Jun 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Winged Helix Domain, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Contursi, B. Farina, L. Pirone, S. Fusco, L. Russo, S. Bartolucci, R. Fattorusso, E. Pedone
Structural And Functional Studies Of Stf76 From The Sulfolobus Islandicus Plasmid-Virus Pssvx: A Novel Peculiar Member Of The Winged Helix-Turn-Helix Transcription Factor Family.
Nucleic Acids Res. V. 42 5993 2014
PubMed-ID: 24682827  |  Reference-DOI: 10.1093/NAR/GKU215

(-) Compounds

Molecule 1 - SULFOLOBUS TRANSCRIPTION FACTOR 76 AMINOACID PROTEIN, STF76
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET-30A(+)
    Organism Scientific: FUSELLOVIRIDAE
    Organism Taxid: 10474
    Other Details: STF76 IS A PROTEIN ENCODED BY THE PLASMID/VIRUS PSSVX. PSSVX BELONGS TO FUSELLOVIRIDAE (TAXON IDENTIFIER: 10474) AND COEXIST IN THE SAME SULFOLOBUS ISLANDICUS REY15/4 HOST (TAXON IDENTIFIER: 930945)

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MLG)

(-) Sites  (0, 0)

(no "Site" information available for 2MLG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MLG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MLG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MLG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MLG)

(-) Exons   (0, 0)

(no "Exon" information available for 2MLG)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:77
 aligned with O05472_SULIS | O05472 from UniProtKB/TrEMBL  Length:81

    Alignment length:77
                                                                                                    81   
                                    17        27        37        47        57        67        77   |   
          O05472_SULIS    8 KEKLTLTQLILIRLSNRGCQTLEELQTFTNAKREVLLVILTRMHKKGLIYRKWRRFGGRKFREYCLKSREEIVG---  -
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.eeehhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee..eeeeeeee..hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  2mlg A  3 KAKLSLTQLILIRLSNRGCQTLEELEEFTQAKREVLLVTLTRLHQRGVIYRKWRHFSGRKYREYCLKHRDELADLEH 79
                                    12        22        32        42        52        62        72
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MLG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MLG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MLG)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2MLG)

 Visualization

(-) Interactive Views

NMR Structure
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2mlg)
 
  Sites
(no "Sites" information available for 2mlg)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2mlg)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ NMR Structure - model 1 PNG format | NMR Structure - all models PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2mlg
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  O05472_SULIS | O05472
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  O05472_SULIS | O05472
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2MLG)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2MLG)