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(-) Description

Title :  STRUCTURE OF THE M04/GP34 MOUSE CYTOMEGALOVIRUS IMMUNOEVASIN CORE DOMAIN
 
Authors :  N. G. Sgourakis, K. Natarajan, D. H. Margulies, A. Bax
Date :  21 Dec 13  (Deposition) - 16 Jul 14  (Release) - 22 Oct 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Mhc Class-I Regulation, Immunoglobulin-Like Fold, Natural Killer Decoy, Missing-Self, Rosetta Modelling, Ilv Labelling, Residual Dipolar Couplings, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. G. Sgourakis, K. Natarajan, J. Ying, B. Vogeli, L. F. Boyd, D. H. Margulies, A. Bax
The Structure Of Mouse Cytomegalovirus M04 Protein Obtained From Sparse Nmr Data Reveals A Conserved Fold Of The M02-M0 Viral Immune Modulator Family.
Structure V. 22 1263 2014
PubMed-ID: 25126960  |  Reference-DOI: 10.1016/J.STR.2014.05.018

(-) Compounds

Molecule 1 - M04 IMMUNOEVASIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PLASMID
    Gene: M04
    Mutation: YES
    Organism Common: MUHV-1
    Organism Scientific: MURINE CYTOMEGALOVIRUS
    Organism Taxid: 69156
    Strain: K181

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MIZ)

(-) Sites  (0, 0)

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(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:26 -A:147
2A:47 -A:142

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
 aligned with A2Q6L0_MUHVK | A2Q6L0 from UniProtKB/TrEMBL  Length:266

    Alignment length:156
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192      
         A2Q6L0_MUHVK    43 RHSLGCYFKGINPTKVPSSDPRTILKCTLPDVKVNASWTLEWVVVNLHTSVDVTSYYESSPNSEPRFLRAILNFTPMHGLRTKNLLKVKDGFQVDNSTDNGNGGNLYVYPNATTGSADSVRCRLRMCPWTSNSKMTAPDEEMLRKMSEVLNLPNYG 198
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) .....................................................................................-hhhh......................hhhhhh....................hhhhhhhhhhhhh..... Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------eee-------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2miz A  21 RHSLGCYFKGINPTKVPSSDPRTVLKCTLPDVKVNASWTLEWVVVNLHTSVDVTSYYESSPNSEPRFLRAILNFTPMHGLRTKNLLKVKDGFQVDNSTDNGNGGNLYVYPNATTGSADSVRCRLRMCPWTSNSKMTAPDEEMLRKMSEVLNLPNYG 176
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MIZ)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (A2Q6L0_MUHVK | A2Q6L0)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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