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(-) Description

Title :  THE SOLUTION NMR STRUCTURE OF MAXIMIN-4 IN SDS MICELLES
 
Authors :  O. Toke, Z. Banoczi, P. Kiraly, R. Heinzmann, J. Burck, A. S. Ulrich, F. H
Date :  05 Dec 13  (Deposition) - 25 Dec 13  (Release) - 25 Dec 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Membrane Peptides, Lipid Bilayers, Bacterial Resistance, Antimicrobial Peptides, Antimicrobial Protein, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Toke, Z. Banoczi, P. Kiraly, R. Heinzmann, J. Burck, A. S. Ulrich, F. Hudecz
A Kinked Antimicrobial Peptide From Bombina Maxima. I. Three-Dimensional Structure Determined By Nmr In Membrane-Mimicking Environments.
Eur. Biophys. J. V. 40 447 2011
PubMed-ID: 21234559  |  Reference-DOI: 10.1007/S00249-010-0657-0

(-) Compounds

Molecule 1 - ANTIMICROBIAL PEPTIDE
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 44-70
    Organism Common: GIANT FIRE-BELLIED TOAD, CHINESE RED BELLY TOAD
    Organism Scientific: BOMBINA MAXIMA
    Organism Taxid: 161274
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MHW)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:27
 aligned with C3RSY7_BOMMX | C3RSY7 from UniProtKB/TrEMBL  Length:139

    Alignment length:27
                                    53        63       
          C3RSY7_BOMMX   44 GIGGVLLSAGKAALKGLAKVLAEKYAN 70
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  2mhw A  1 GIGGVLLSAGKAALKGLAKVLAEKYAN 27
                                    10        20       


Chain A from PDB  Type:PROTEIN  Length:27
 aligned with M4H33_BOMMX | Q58T52 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:27
                                    53        63       
           M4H33_BOMMX   44 GIGGVLLSAGKAALKGLAKVLAEKYAN 70
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  2mhw A  1 GIGGVLLSAGKAALKGLAKVLAEKYAN 27
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MHW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MHW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MHW)

(-) Gene Ontology  (7, 10)

NMR Structure(hide GO term definitions)
Chain A   (M4H33_BOMMX | Q58T52)
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0044179    hemolysis in other organism    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.
    GO:0031640    killing of cells of other organism    Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A   (C3RSY7_BOMMX | C3RSY7)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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