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(-) Description

Title :  NMR STRUCTURE OF THE CATALYTIC DOMAIN OF THE LARGE SERINE RESOLVASE TNPX
 
Authors :  S. J. Headey, A. Sivakumaran, V. Adams, A. J. W. Rodgers, J. I. Rood, M. J. M. C. J. Wilce
Date :  20 Nov 13  (Deposition) - 26 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Serine Resolvase, Recombination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Headey, A. Sivakumaran, V. Adams, A. J. W. Rodgers, J. I. Scanlon, M. C. J. Wilce
Solution Structure And Dna Binding Of The Catalytic Of The Large Serine Resolvase Tnpx
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TNPX
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Variant: C43
    Expression System Vector: PGEX4T2
    Expression System Vector Type: VECTOR
    Fragment: UNP RESIDUES 2-120
    Gene: TN4451, TNPX
    Organism Scientific: CLOSTRIDIUM PERFRINGENS
    Organism Taxid: 1502

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:120
 aligned with O05415_CLOPF | O05415 from UniProtKB/TrEMBL  Length:707

    Alignment length:120
                                    10        20        30        40        50        60        70        80        90       100       110       120
         O05415_CLOPF     1 MSRTSRITALYERLSRDDDLTGESNSITNQKKYLEDYARRNGFENIRHFTDDGFSGVNFNRPGFQSLIKEVEAGNVETLIVKDMSRLGRNYLQVGFYTEVLFPQKNVRFLAINNSIDSNN 120
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee...............hhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhhhh..eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2mhc A   1 GSRTSRITALYERLSRDDDLTGESNSITNQKKYLEDYARRNGFENIRHFTDDGFSGVNFNRPGFQSLIKEVEAGNVETLIVKDMSRLGRNYLQVGFYTEVLFPQKNVRFLAINNSIDSNN 120
                                    10        20        30        40        50        60        70        80        90       100       110       120
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 Classification and Annotation

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (O05415_CLOPF | O05415)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000150    recombinase activity    Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
biological process
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

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