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(-) Description

Title :  STRUCTURE AND NMR ASSIGNMENTS OF LANTIBIOTIC NAI-107 IN DPC MICELLES
 
Authors :  D. Munch, A. Muller, T. Schneider, B. Kohl, M. Wenzel, J. Bandow, S. Maff M. Sosio, S. Donadio, R. Wimmer, H. Sahl
Date :  18 Nov 13  (Deposition) - 05 Mar 14  (Release) - 14 May 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Lantibiotic, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Munch, A. Muller, T. Schneider, B. Kohl, M. Wenzel, J. E. Bandow, S. Maffioli, M. Sosio, S. Donadio, R. Wimmer, H. G. Sahl
The Lantibiotic Nai-107 Binds To Bactoprenol-Bound Cell Wal Precursors And Impairs Membrane Functions.
J. Biol. Chem. V. 289 12063 2014
PubMed-ID: 24627484  |  Reference-DOI: 10.1074/JBC.M113.537449

(-) Compounds

Molecule 1 - LANTIBIOTIC 107891
    Chains: A
    Organism Scientific: MICROBISPORA
    Organism Taxid: 415003
    Strain: 107891

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 75)

NMR Structure (8, 75)
No.NameCountTypeFull Name
15CW1Mod. Amino Acid5-CHLORO-L-TRYPTOPHAN
2DAL4Mod. Amino AcidD-ALANINE
3DBB1Mod. Amino AcidD-ALPHA-AMINOBUTYRIC ACID
4DBU1Mod. Amino Acid(2Z)-2-AMINOBUT-2-ENOIC ACID
5DHA1Mod. Amino Acid2-AMINO-ACRYLIC ACID
6DPV65Ligand/IonDODECYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE
7HYP1Mod. Amino Acid4-HYDROXYPROLINE
8TEE1Mod. Amino Acid2-AMINO-ETHENETHIOL
NMR Structure * (8, 75)
No.NameCountTypeFull Name
15CW1Mod. Amino Acid5-CHLORO-L-TRYPTOPHAN
2DAL4Mod. Amino AcidD-ALANINE
3DBB1Mod. Amino AcidD-ALPHA-AMINOBUTYRIC ACID
4DBU1Mod. Amino Acid(2Z)-2-AMINOBUT-2-ENOIC ACID
5DHA1Mod. Amino Acid2-AMINO-ACRYLIC ACID
6DPV65Ligand/IonDODECYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE
7HYP1Mod. Amino Acid4-HYDROXYPROLINE
8TEE1Mod. Amino Acid2-AMINO-ETHENETHIOL

(-) Sites  (64, 64)

NMR Structure (64, 64)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREDPV A:102 , DPV A:103 , DPV A:151BINDING SITE FOR RESIDUE DPV A 101
02AC2SOFTWAREDPV A:101BINDING SITE FOR RESIDUE DPV A 102
03AC3SOFTWAREDPV A:101 , DPV A:115 , DPV A:130BINDING SITE FOR RESIDUE DPV A 103
04AC4SOFTWAREDPV A:119 , DPV A:131 , DPV A:132 , DPV A:163BINDING SITE FOR RESIDUE DPV A 104
05AC5SOFTWAREDPV A:121BINDING SITE FOR RESIDUE DPV A 105
06AC6SOFTWARE5CW A:4 , DPV A:153BINDING SITE FOR RESIDUE DPV A 106
07AC7SOFTWAREDPV A:109 , DPV A:134 , DPV A:145BINDING SITE FOR RESIDUE DPV A 107
08AC8SOFTWAREDPV A:110 , DPV A:122 , DPV A:123BINDING SITE FOR RESIDUE DPV A 108
09AC9SOFTWAREDPV A:107 , DPV A:135 , DPV A:145BINDING SITE FOR RESIDUE DPV A 109
10BC1SOFTWAREDPV A:108 , DPV A:123 , DPV A:136 , DPV A:164BINDING SITE FOR RESIDUE DPV A 110
11BC2SOFTWARELEU A:6 , DBB A:8 , DPV A:125 , DPV A:155BINDING SITE FOR RESIDUE DPV A 111
12BC3SOFTWAREDPV A:128 , DPV A:158BINDING SITE FOR RESIDUE DPV A 112
13BC4SOFTWAREDPV A:126 , DPV A:128BINDING SITE FOR RESIDUE DPV A 113
14BC5SOFTWAREDPV A:127 , DPV A:147 , DPV A:148BINDING SITE FOR RESIDUE DPV A 114
15BC6SOFTWAREDPV A:103 , DPV A:116 , DPV A:130 , DPV A:142 , DPV A:161BINDING SITE FOR RESIDUE DPV A 115
16BC7SOFTWAREDPV A:115 , DPV A:117 , DPV A:161BINDING SITE FOR RESIDUE DPV A 116
17BC8SOFTWAREDPV A:116 , DPV A:141 , DPV A:147 , DPV A:149 , DPV A:161BINDING SITE FOR RESIDUE DPV A 117
18BC9SOFTWAREDPV A:104 , DPV A:132BINDING SITE FOR RESIDUE DPV A 119
19CC1SOFTWAREDPV A:121 , DPV A:133 , DPV A:143 , DPV A:144BINDING SITE FOR RESIDUE DPV A 120
20CC2SOFTWAREDPV A:105 , DPV A:120BINDING SITE FOR RESIDUE DPV A 121
21CC3SOFTWAREDPV A:108BINDING SITE FOR RESIDUE DPV A 122
22CC4SOFTWAREDPV A:108 , DPV A:110 , DPV A:126 , DPV A:146 , DPV A:164BINDING SITE FOR RESIDUE DPV A 123
23CC5SOFTWAREDPV A:158BINDING SITE FOR RESIDUE DPV A 124
24CC6SOFTWAREGLY A:10 , DPV A:111 , DPV A:137 , DPV A:138 , DPV A:164BINDING SITE FOR RESIDUE DPV A 125
25CC7SOFTWAREDPV A:113 , DPV A:123 , DPV A:148BINDING SITE FOR RESIDUE DPV A 126
26CC8SOFTWAREDPV A:114 , DPV A:141 , DPV A:142 , DPV A:151BINDING SITE FOR RESIDUE DPV A 127
27CC9SOFTWAREDPV A:112 , DPV A:113 , DPV A:129BINDING SITE FOR RESIDUE DPV A 128
28DC1SOFTWAREDPV A:128BINDING SITE FOR RESIDUE DPV A 129
29DC2SOFTWAREDPV A:103 , DPV A:115 , DPV A:131BINDING SITE FOR RESIDUE DPV A 130
30DC3SOFTWAREDPV A:104 , DPV A:130BINDING SITE FOR RESIDUE DPV A 131
31DC4SOFTWAREDPV A:104 , DPV A:119BINDING SITE FOR RESIDUE DPV A 132
32DC5SOFTWAREDPV A:120 , DPV A:144 , DPV A:159BINDING SITE FOR RESIDUE DPV A 133
33DC6SOFTWAREDPV A:107 , DPV A:135 , DPV A:154BINDING SITE FOR RESIDUE DPV A 134
34DC7SOFTWAREDPV A:109 , DPV A:134 , DPV A:145 , DPV A:155 , DPV A:156BINDING SITE FOR RESIDUE DPV A 135
35DC8SOFTWAREDPV A:110 , DPV A:145 , DPV A:164BINDING SITE FOR RESIDUE DPV A 136
36DC9SOFTWAREDPV A:125 , DPV A:138BINDING SITE FOR RESIDUE DPV A 137
37EC1SOFTWAREDPV A:125 , DPV A:137 , DPV A:157 , DPV A:158 , DPV A:162BINDING SITE FOR RESIDUE DPV A 138
38EC2SOFTWAREDPV A:157 , DPV A:162BINDING SITE FOR RESIDUE DPV A 139
39EC3SOFTWARE5CW A:4 , DPV A:152 , DPV A:153BINDING SITE FOR RESIDUE DPV A 140
40EC4SOFTWAREDPV A:117 , DPV A:127 , DPV A:142 , DPV A:161BINDING SITE FOR RESIDUE DPV A 141
41EC5SOFTWAREDPV A:115 , DPV A:127 , DPV A:141 , DPV A:160 , DPV A:161BINDING SITE FOR RESIDUE DPV A 142
42EC6SOFTWAREDPV A:120 , DPV A:144BINDING SITE FOR RESIDUE DPV A 143
43EC7SOFTWAREDPV A:120 , DPV A:133 , DPV A:143BINDING SITE FOR RESIDUE DPV A 144
44EC8SOFTWAREDPV A:107 , DPV A:109 , DPV A:135 , DPV A:136BINDING SITE FOR RESIDUE DPV A 145
45EC9SOFTWAREDPV A:123 , DPV A:160 , DPV A:165BINDING SITE FOR RESIDUE DPV A 146
46FC1SOFTWAREDPV A:114 , DPV A:117BINDING SITE FOR RESIDUE DPV A 147
47FC2SOFTWAREDPV A:114 , DPV A:126BINDING SITE FOR RESIDUE DPV A 148
48FC3SOFTWAREDPV A:117BINDING SITE FOR RESIDUE DPV A 149
49FC4SOFTWAREDPV A:162BINDING SITE FOR RESIDUE DPV A 150
50FC5SOFTWAREDPV A:101 , DPV A:127BINDING SITE FOR RESIDUE DPV A 151
51FC6SOFTWAREDPV A:140 , DPV A:153BINDING SITE FOR RESIDUE DPV A 152
52FC7SOFTWARE5CW A:4 , DPV A:106 , DPV A:140 , DPV A:152BINDING SITE FOR RESIDUE DPV A 153
53FC8SOFTWAREVAL A:1 , DPV A:134BINDING SITE FOR RESIDUE DPV A 154
54FC9SOFTWAREDPV A:111 , DPV A:135 , DPV A:156BINDING SITE FOR RESIDUE DPV A 155
55GC1SOFTWAREDPV A:135 , DPV A:155BINDING SITE FOR RESIDUE DPV A 156
56GC2SOFTWAREDPV A:138 , DPV A:139 , DPV A:162BINDING SITE FOR RESIDUE DPV A 157
57GC3SOFTWAREDPV A:112 , DPV A:124 , DPV A:138BINDING SITE FOR RESIDUE DPV A 158
58GC4SOFTWAREDPV A:133BINDING SITE FOR RESIDUE DPV A 159
59GC5SOFTWAREDPV A:142 , DPV A:146 , DPV A:165BINDING SITE FOR RESIDUE DPV A 160
60GC6SOFTWAREDPV A:115 , DPV A:116 , DPV A:117 , DPV A:141 , DPV A:142BINDING SITE FOR RESIDUE DPV A 161
61GC7SOFTWAREDPV A:138 , DPV A:139 , DPV A:150 , DPV A:157BINDING SITE FOR RESIDUE DPV A 162
62GC8SOFTWAREDPV A:104BINDING SITE FOR RESIDUE DPV A 163
63GC9SOFTWAREDPV A:110 , DPV A:123 , DPV A:125 , DPV A:136BINDING SITE FOR RESIDUE DPV A 164
64HC1SOFTWAREDPV A:146 , DPV A:160BINDING SITE FOR RESIDUE DPV A 165

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MH5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MH5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MH5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MH5)

(-) Exons   (0, 0)

(no "Exon" information available for 2MH5)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:24
 aligned with LAN91_MICS0 | P85065 from UniProtKB/Swiss-Prot  Length:24

    Alignment length:24
                                    10        20    
           LAN91_MICS0    1 VTSWSLCTPGCTSPGGGSNCSFCC 24
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ...............hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                  2mh5 A  1 VtswsLCxPGCTspGGGsNCsFCc 24
                             ||||  |10  ||   |20|  |
                             ||||  |    ||   |  |  |
                             2-DBU |    ||   |  |  |
                              3-DAL|    ||   |  |  |
                               4-5CW    ||   |  |  |
                                5-DHA   ||   |  |  |
                                   8-DBB||   |  |  |
                                       13-DAL|  |  |
                                        14-HYP  |  |
                                            18-DAL |
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MH5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MH5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MH5)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (LAN91_MICS0 | P85065)
molecular function
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.

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