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(-) Description

Title :  SOLUTION STRUCTURE OF THE C-TERMINALLY ENCODED PEPTIDE OF THE PLANT PARASITIC NEMATODE MELOIDOGYNE HAPLA - CEP11
 
Authors :  B. G. Bobay, P. Digennaro, D. M. Bird
Date :  14 Oct 13  (Deposition) - 11 Dec 13  (Release) - 25 Dec 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Cep, Meloidogyne, Root-Knot Nematode, Cle, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. G. Bobay, P. Digennaro, E. Scholl, N. Imin, M. A. Djordjevic, D. Mck Bird
Solution Nmr Studies Of The Plant Peptide Hormone Cep Infor Function.
Febs Lett. V. 587 3979 2013
PubMed-ID: 24211833  |  Reference-DOI: 10.1016/J.FEBSLET.2013.10.033

(-) Compounds

Molecule 1 - CEP11
    Chains: A
    Engineered: YES
    Organism Scientific: MELOIDOGYNE HAPLA
    Organism Taxid: 6305
    Other Details: SYNTHETIC PEPTIDE WITH MODIFICATION OF HYDROXY- PROLINE AT POSITIONS 4 AND 11
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1HZP2Mod. Amino Acid(4S)-4-HYDROXY-L-PROLINE
NMR Structure * (1, 2)
No.NameCountTypeFull Name
1HZP2Mod. Amino Acid(4S)-4-HYDROXY-L-PROLINE

(-) Sites  (0, 0)

(no "Site" information available for 2MFM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MFM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MFM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MFM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MFM)

(-) Exons   (0, 0)

(no "Exon" information available for 2MFM)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:15
 aligned with G7K427_MEDTR | G7K427 from UniProtKB/TrEMBL  Length:80

    Alignment length:15
                                    70     
          G7K427_MEDTR   61 AFRPTSPGHSPGVGH 75
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ............... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                  2mfm A  1 AFRpTAPGHSpGVGH 15
                               |    10|    
                               |     11-HZP
                               4-HZP
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MFM)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MFM)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (G7K427_MEDTR | G7K427)
biological process
    GO:0048364    root development    The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G7K427_MEDTR | G7K427: 2mfo

(-) Related Entries Specified in the PDB File

2mfo