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(-) Description

Title :  REFINED CRYSTAL STRUCTURE OF THE MC/PC603 FAB-PHOSPHOCHOLINE COMPLEX AT 3.1 ANGSTROMS RESOLUTION
 
Authors :  E. A. Padlan, G. H. Cohen, D. R. Davies
Date :  15 Oct 84  (Deposition) - 02 Jan 85  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Immunoglobulin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. A. Padlan, G. H. Cohen, D. R. Davies
Refined Crystal Structure Of The Mc/Pc603 Fab-Phosphocholin Complex At 3. 1 Angstroms Resolution
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - IGA-KAPPA MCPC603 FAB (LIGHT CHAIN)
    ChainsL
    EngineeredYES
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
 
Molecule 2 - IGA-KAPPA MCPC603 FAB (HEAVY CHAIN)
    ChainsH
    EngineeredYES
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PC1Ligand/IonPHOSPHOCHOLINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR H:33 , ARG H:52 , TRP H:107 , ASP L:97 , HIS L:98 , TYR L:100 , LEU L:102BINDING SITE FOR RESIDUE PC H 223

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:98
2H:148 -H:206
3H:198 -H:222
4L:23 -L:94
5L:140 -L:200

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ser L:7 -Pro L:8
2Tyr L:100 -Pro L:101
3Tyr L:146 -Pro L:147
4Asp H:142 -Pro H:143
5Phe H:154 -Pro H:155

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MCP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MCP)

(-) Exons   (0, 0)

(no "Exon" information available for 2MCP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain H from PDB  Type:PROTEIN  Length:222
 aligned with HVM20_MOUSE | P01789 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:222
                                                                                                                                                   122                                                                                                    
                                    10        20        30        40        50        60        70        80        90       100       110       120 |       -         -         -         -         -         -         -         -         -         -  
          HVM20_MOUSE     1 EVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPPGKRLEWIAASRNKGNKYTTEYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCARNYYGSTWYFDVWGAGTTVTVSS----------------------------------------------------------------------------------------------------   -
               SCOP domains d2mcph1 H:1-121 Immunoglobulin heavy chain variable domain, VH                                                           d2mcph2 H:122-222 Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha                       SCOP domains
               CATH domains 2mcpH01 H:1-123 Immunoglobulins                                                                                            2mcpH02 H:124-222 Immunoglobulins                                                                   CATH domains
               Pfam domains -V-set-2mcpH01 H:2-120                                                                                                  ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...ee....eeeeeeeee..hhhhheeeeeee......eeeee...................eeeeee....eeeeeee..hhhhheeeeeeeeee...eeeeee...eeeee........eeeee..........eeeeeeeeee.....eeeee.......eeee...ee.....eeeeeeeeehhhhh.....eeeeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2mcp H   1 EVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPPGKRLEWIAASRNKGNKYTTEYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCARNYYGSTWYFDVWGAGTTVTVSSESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNC 222
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220  

Chain L from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains d2mcpl1 L:1-114 Immunoglobulin light chain kappa variable domain, VL-kappa                                        d2mcpl2 L:115-220 Immunoglobulin light chain kappa constant domain, CL-kappa                               SCOP domains
               CATH domains 2mcpL01 L:1-114 Immunoglobulins                                                                                   2mcpL02 L:115-217 Immunoglobulins                                                                      --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.............eeeeee......eeeee...ee.......eeeeee..eeeeee........eeeeeee......ee....eeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeee.........eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mcp L   1 DIVMTQSPSSLSVSAGERVTMSCKSSQSLLNSGNQKNFLAWYQQKPGQPPKLLIYGASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDHSYPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 220
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Ig (577)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain H   (HVM20_MOUSE | P01789)
molecular function
    GO:0003823    antigen binding    Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HVM20_MOUSE | P017891mcp 2cju

(-) Related Entries Specified in the PDB File

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