2M4M - JenaLib

Title :   SOLUTION STRUCTURE OF THE RRM DOMAIN OF THE HYPOTHETICAL PROTEIN CAGL0M09691G FROM CANDIDA GLABRATA

Authors :   R. Harris, B. Hillerich, M. Ahmed, J. B. Bonanno, S. Chamala, B. Evans, J J. Hammonds, E. Washington, M. Stead, J. Love, J. Attonito, H. Patel, R. D. Seidel, Y. M. Chook, M. P. Rout, M. E. Girvin, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc), Nucleocyto Transport: A Target For Cellular Control (Npcxstals)

Date :   07 Feb 13 (Deposition) - 27 Feb 13 (Release) - 27 Feb 13 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Structural Genomics, Unknown Function, Thioredoxin-Like, New York Structural Genomics Research Consortium, Nucleocytoplasmic Transport: A Target For Cellular Control, Psi-Biology (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Harris, B. Hillerich, M. Ahmed, J. B. Bonanno, S. Chamala, B. Evans, J. Lafleur, J. Hammonds, E. Washington, M. Stead, J. Love, J. Attonito H. B. Patel, R. D. Seidel, Y. M. Chook, M. P. Rout, M. E. Girvin, S. C. Almo
Solution Structure Of The Rrm Domain Of The Hypothetical Protein Cagl0M09691G From Candida Glabrata
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:124
 aligned with Q6FJ27_CANGA | Q6FJ27 from UniProtKB/TrEMBL  Length:406

    Alignment length:141
                                   177       187       197       207       217       227       237       247       257       267       277       287       297       307 
         Q6FJ27_CANGA   168 SSIGSESETGNAVVVFGYREAITKQILAYFAQFGEILEDLESELGDTETMRTPGYFFQQAPNRRRISREHGRTWTKLTYANHSSYLRALREHGTIYCGAAIGCVPYKHELISELSRDTYNSMNDVKQTNSISTNQLTQHNQ 308
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee.....hhhhhhhhhh...............hhhhh......................eeeee..hhhhhhhhhh....ee..ee.eeee.hhhhhhhhhhhh..-----------------.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2m4m A   1 MSLGSESETGNAVVVFGYREAITKQILAYFAQFGEILEDLESELGDTETMRTPGYFFQQAPNRRRISREHGRTWTKLTYANHSSYLRALREHGTIYCGAAIGCVPYKHELISELSREGHH-----------------HHHH 124
                                    10        20        30        40        50        60        70        80        90       100       110       120         -       123 
                                                                                                                                                 120               121

Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (15, 15)

NMR Structure(hide GO term definitions)

Chain A (Q6FJ27_CANGA | Q6FJ27)

molecular function
	GO:0005487	nucleocytoplasmic transporter activity	Enables the directed movement of substances between the nucleus and the cytoplasm of a cell.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005543	phospholipid binding	Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
	GO:0003697	single-stranded DNA binding	Interacting selectively and non-covalently with single-stranded DNA.
biological process
	GO:0006607	NLS-bearing protein import into nucleus	The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane.
	GO:0006999	nuclear pore organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear pore.
	GO:0045893	positive regulation of transcription, DNA-templated	Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006606	protein import into nucleus	The directed movement of a protein from the cytoplasm to the nucleus.
	GO:0034501	protein localization to kinetochore	Any process in which a protein is transported to, or maintained at, the kinetochore.
	GO:0007088	regulation of mitotic nuclear division	Any process that modulates the frequency, rate or extent of mitosis.
	GO:0060188	regulation of protein desumoylation	Any process that modulates the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process in which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein.
	GO:0072417	response to spindle checkpoint signaling	A process that occurs in response to signals generated as a result of spindle checkpoint signaling.
cellular component
	GO:0005643	nuclear pore	Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
	GO:0044613	nuclear pore central transport channel	The central substructure of the nuclear pore complex (NPC), through which nucleocytoplasmic transport of RNAs, proteins and small molecules occurs. The central transport channel is filled with FG-nucleoporins, which form a selective barrier and provide a series of binding sites for transporter proteins. Characterized S. cerevisiae FG-nucleoporins include Nup159p, Nup145Np, Nup116p, Nup100p, Nsp1p, Nup57p, Nup49p, Nup42p, Nup53p, Nup59p/Asm4p, Nup60p and Nup1. Characterized vertebrate FG-nucleoporins include Nup214, Nup98, Nup62, Nup54, Nup58/45, NLP1, and Nup153.
	GO:0044615	nuclear pore nuclear basket	A filamentous, cage-like assembly on the nuclear face of the nuclear pore complex (NPC). In S. cerevisiae, Mlp1p and Mlp2p are two major components of the NPC nuclear basket. In vertebrates, Tpr is a major component.

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