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Title :   SOLUTION STRUCTURE OF THE DELTA SUBUNIT OF RNA POLYMERASE FROM BACILLUS SUBTILIS

Authors :   V. Papouskova, J. Novacek, P. Kaderavek, L. Zidek, A. Rabatinova, H. Sa L. Krasny, V. Sklenar

Date :   07 Feb 13 (Deposition) - 09 Oct 13 (Release) - 12 Oct 16 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Delta Subunit, Rna Polymerase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Papouskova, P. Kaderavek, O. Otrusinova, A. Rabatinova, H. Sanderova, J. Novacek, L. Krasny, V. Sklenar, L. Zidek
Structural Study Of The Partially Disordered Full-Length Delta Subunit Of Rna Polymerase From Bacillus Subtilis.
Chembiochem V. 14 1772 2013
PubMed-ID: 23868186 | Reference-DOI: 10.1002/CBIC.201300226

Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE SUBUNIT DELTA
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	469008
	Expression System Vector	:	BL21(DE3)
	Gene	:	RPOE, BSU37160
	Organism Scientific	:	BACILLUS SUBTILIS SUBSP. SUBTILIS
	Organism Taxid	:	224308
	Strain	:	168
	Synonym	:	RNAP DELTA FACTOR

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:81
 aligned with RPOE_BACSU | P12464 from UniProtKB/Swiss-Prot  Length:173

    Alignment length:81
                                    11        21        31        41        51        61        71        81 
            RPOE_BACSU    2 GIKQYSQEELKEMALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDRIAQFYTDLNIDGRFLALSDQTWGLRSWY 82
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh.hhhhhhhhhhhhhh..eehhhhhhhhhhhh....hhhhhhhhhhhhhhh....eee....eeee.hhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2m4k A  2 GIKQYSQEELKEMALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDRIAQFYTDLNIDGRFLALSDQTWGLRSWY 82
                                    11        21        31        41        51        61        71        81

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Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (5, 5)

NMR Structure(hide GO term definitions)

Chain A (RPOE_BACSU | P12464)

molecular function
	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

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