2M3T - JenaLib

NMR Structure - model 1 (Jmol Viewer)

NMR Structure - all models (Jmol Viewer)

Title :   SOLUTION-STATE NMR STRUCTURE OF WILD-TYPE HUMAN GAMMA(S)-CRYSTALLIN

Authors :   W. D. Brubaker, R. W. Martin

Date :   25 Jan 13 (Deposition) - 13 Nov 13 (Release) - 25 Dec 13 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (21x)
NMR Structure *: A  (1x)

Keywords :   Gamma-S, Eye Lens, Aggregation, Crystallin, Cataract, Crygs, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. N. Kingsley, W. D. Brubaker, S. Markovic, A. Diehl, A. J. Brindley, H. Oschkinat, R. W. Martin
Preferential And Specific Binding Of Human Alpha B-Crystallin To A Cataract-Related Variant Of Gamma S-Crystallin.
Structure V. 21 2221 2013
PubMed-ID: 24183572 | Reference-DOI: 10.1016/J.STR.2013.09.017

Molecule 1 - BETA-CRYSTALLIN S
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	ROSETTA (DE3)
	Expression System Taxid	:	562
	Expression System Vector	:	PET28(A)
	Gene	:	CRYGS, GRYG8
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GAMMA-S-CRYSTALLIN, GAMMA-CRYSTALLIN S
	Variant	:	WILD-TYPE

		1
NMR Structure (21x)	:	A
NMR Structure * (1x)	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2M3T)

(no "Site" information available for 2M3T)

(no "SS Bond" information available for 2M3T)

(no "Cis Peptide Bond" information available for 2M3T)

NMR Structure (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069797	G	18	V	CRBS_HUMAN	Disease (CTRCT20)	104893736	A	G	18	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

NMR Structure * (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069797	G	18	V	CRBS_HUMAN	Disease (CTRCT20)	104893736	A	G	18	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

NMR Structure (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CRYSTALLIN_BETA_GAMMA	PS50915	Crystallins beta and gamma 'Greek key' motif profile.	CRBS_HUMAN	6-44 45-87 94-134 135-177	4	A:6-44 A:45-87 A:94-134 A:135-177

NMR Structure * (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CRYSTALLIN_BETA_GAMMA	PS50915	Crystallins beta and gamma 'Greek key' motif profile.	CRBS_HUMAN	6-44 45-87 94-134 135-177	4	A:6-44 A:45-87 A:94-134 A:135-177

NMR Structure (3, 3)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000392499	1	ENSE00001605010	chr3:186264491-186264181	311	CRBS_HUMAN	-	0	0	-	-
1.2b	ENST00000392499	2b	ENSE00001690623	chr3:186262144-186262095	50	CRBS_HUMAN	1-7	7	1	A:1-7	7
1.3b	ENST00000392499	3b	ENSE00000969192	chr3:186257386-186257144	243	CRBS_HUMAN	8-88	81	1	A:8-88	81
1.4b	ENST00000392499	4b	ENSE00001653834	chr3:186256757-186256230	528	CRBS_HUMAN	89-178	90	1	A:89-178	90

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:178
 aligned with CRBS_HUMAN | P22914 from UniProtKB/Swiss-Prot  Length:178

    Alignment length:178
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170        
           CRBS_HUMAN     1 MSKTGTKITFYEDKNFQGRRYDCDCDCADFHTYLSRCNSIKVEGGTWAVYERPNFAGYMYILPQGEYPEYQRWMGLNDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE 178
               SCOP domains d2m3ta1 A:1-91 automated matches                                                           d2m3ta2 A:92-178 automated matches                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee........eeee..............eeee.....eeeeee...eeeeeee...ee.hhhhhh........eee..........eeeeee...eeeeeee.....hhhhhhh.....eee.......eeee...eeeee............................ Sec.struct. author
                 SAPs(SNPs) -----------------V---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----CRYSTALLIN_BETA_GAMMA  PDB: A:6-44     CRYSTALLIN_BETA_GAMMA  PDB: A:45-87        ------CRYSTALLIN_BETA_GAMMA  PDB: A:94-134     CRYSTALLIN_BETA_GAMMA  PDB: A:135-177      - PROSITE
               Transcript 1 1.2b   Exon 1.3b  PDB: A:8-88 UniProt: 8-88                                             Exon 1.4b  PDB: A:89-178 UniProt: 89-178                                                   Transcript 1
                 2m3t A   1 GSKTGTKITFYEDKNFQGRRYDCDCDCADFHTYLSRCNSIKVEGGTWAVYERPNFAGYMYILPQGEYPEYQRWMGLNDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE 178
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

NMR Structure

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: All beta proteins (24004)

Fold: gamma-Crystallin-like (65)

Superfamily: gamma-Crystallin-like (65)

Family: automated matches (25)

Protein domain: automated matches (25)

Human (Homo sapiens) [TaxId: 9606] (9)

1a	d2m3ta1	A:1-91
1b	d2m3ta2	A:92-178

(no "CATH Domain" information available for 2M3T)

(no "Pfam Domain" information available for 2M3T)

NMR Structure(hide GO term definitions)

Chain A (CRBS_HUMAN | P22914)

molecular function
	GO:0005212	structural constituent of eye lens	The action of a molecule that contributes to the structural integrity of the lens of an eye.
biological process
	GO:0002088	lens development in camera-type eye	The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina. An example of this process is found in Mus musculus.
	GO:0002009	morphogenesis of an epithelium	The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.

NMR Structure
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	CRBS_HUMAN \| P22914	:	1ha4 2m3u

2m3u	POINT VARIANT (G18V) OF HUMAN GAMMA-S CRYSTALLIN THAT CAUSES YOUTH-ONSET CATARACT. RELATED ID: 17576 RELATED DB: BMRB

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