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(-) Description

Title :  NMR STRUCTURE OF ANTIAMOEBIN I (PEPTAIBOL ANTIBIOTIC) BOUND TO DMPC/DHPC BICELLES
 
Authors :  Z. O. Shenkarev, A. S. Paramonov, A. K. Gizatullina
Date :  27 Nov 12  (Deposition) - 12 Dec 12  (Release) - 02 Oct 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Membrane-Active, Peptaibol, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. O. Shenkarev, A. S. Paramonov, E. N. Lyukmanova, A. K. Gizatullina, A. V. Zhuravleva, A. A. Tagaev, Z. A. Yakimenko, I. N. Telezhinskaya, M. P. Kirpichnikov, T. V. Ovchinnikova, A. S. Arseniev
Peptaibol Antiamoebin I: Spatial Structure, Backbone Dynamics, Interaction With Bicelles And Lipid-Protein Nanodiscs, And Pore Formation In Context Of Barrel-Stave Model.
Chem. Biodivers. V. 10 838 2013
PubMed-ID: 23681729  |  Reference-DOI: 10.1002/CBDV.201200421

(-) Compounds

Molecule 1 - ANTIAMOEBIN I
    Chains: A
    Organism Scientific: EMERICELLOPSIS MINIMA
    Organism Taxid: 45245

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

NMR Structure (5, 12)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2AIB6Mod. Amino AcidALPHA-AMINOISOBUTYRIC ACID
3DIV2Mod. Amino AcidD-ISOVALINE
4HYP2Mod. Amino Acid4-HYDROXYPROLINE
5PHL1Mod. Amino AcidL-PHENYLALANINOL
NMR Structure * (5, 12)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2AIB6Mod. Amino AcidALPHA-AMINOISOBUTYRIC ACID
3DIV2Mod. Amino AcidD-ISOVALINE
4HYP2Mod. Amino Acid4-HYDROXYPROLINE
5PHL1Mod. Amino AcidL-PHENYLALANINOL

(-) Sites  (0, 0)

(no "Site" information available for 2M1F)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2M1F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2M1F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2M1F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2M1F)

(-) Exons   (0, 0)

(no "Exon" information available for 2M1F)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:17
                                                
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                  2m1f A  1 xFaaaxGLaapQxpaPf 17
                            | ||||  10| ||| |
                            | ||||  ||| 14-HYP
                            1-ACE|  ||| |15-AIB
                              3-AIB ||| |  17-PHL
                               4-AIB||| |    
                                5-AIB|| |    
                                 6-DIV| |    
                                    9-AIB    
                                    10-AIB   
                                     11-HYP
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2M1F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2M1F)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2M1F)

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  2m1f
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 Related Entries

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(-) Related Entries Specified in the PDB File

1dlz 1ih9 1joh 1ob4 1ob6 1ob7 1r9u