2M1A - JenaLib

Title :   HIV-1 REV ARM PEPTIDE (RESIDUES T34-R50)

Authors :   F. Casu, B. M. Duggan, M. Hennig

Date :   21 Nov 12 (Deposition) - 11 Sep 13 (Release) - 11 Sep 13 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Hiv, Rev, Arginine-Rich Motif, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Casu, B. M. Duggan, M. Hennig
The Arginine-Rich Rna-Binding Motif Of Hiv-1 Rev Is Intrinsically Disordered And Folds Upon Rre Binding.
Biophys. J. V. 105 1004 2013
PubMed-ID: 23972852 | Reference-DOI: 10.1016/J.BPJ.2013.07.022

Compounds

Molecule 1 - HIV-1 REV ARGININE-RICH MOTIF (ARM)
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	562
	Expression System Variant	:	DE3
	Expression System Vector	:	P(H)GB1-DERIVED VECTOR
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676
	Other Details	:	EXPRESSION CONTROLLED WITH THE T7 LAC PROMOTER

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:26
 aligned with G3C324_9HIV1 | G3C324 from UniProtKB/TrEMBL  Length:90

    Alignment length:29
                                    13        23         
          G3C324_9HIV1    4 GPQGTRQARRNRRRRWRERQRQICSLSAW 32
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh---hhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                  2m1a A  1 GAMATRQARRNRRRRWRERQR---AAAAR 26
                                    10        20|   |    
                                               21  22

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

NMR Structure(hide GO term definitions)

Chain A (G3C324_9HIV1 | G3C324)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0051028	mRNA transport	The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0044196	host cell nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic host cells.
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

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