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(-) Description

Title :  ANALOG OF THE FRAGMENT 197-221 OF BETA-1 ADRENORECEPTOR
 
Authors :  V. N. Bushuev, K. A. Zykov, Z. D. Bespalova, R. S. Bibilashvili, E. E. Efr S. P. Golitsyn, L. I. Kaznacheeva, T. V. Kuzhetsova, P. S. Levashov, V. P. Masenko, N. A. Mironova, F. S. Molokoedov, P. N. Rutkevich, A. V. R T. V. Sharf, M. V. Sidorova, T. N. Vlasik, E. V. Yanushevskaya
Date :  04 May 12  (Deposition) - 08 May 13  (Release) - 08 May 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Beta1-Adrenoreceptor, Modified Extracellular Loop 197-221, Autoantibodies, Cardiomyopathy, Arrhythmia, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. N. Bushuev
Analog Of The Fragment 197-221 Of 1-Adrenoreceptor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ANALOG OF THE FRAGMENT 197-221 OF BETA-1 ADRENORECEPTOR
    ChainsA
    EngineeredYES
    FragmentEXTRACELLULAR TOPOLOGICAL DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsTHE PEPTIDE WAS PREPARED BY AUTOMATIC SOLID PHASE SYNTHESIS (SPPS) USING THE FMOC STRATEGY STARTING FROM 0.25 MMOL OF COMMERCIAL N FMOC-LYS(BOC)-POLYMER (BACHEM, SWITZERLAND). A COPOLYMER OF STYRENE WITH 1% DIVINYLBENZENE WITH A HYDROXYMETHYLPHENYLOXYMETHYL ANCHORING GROUP (THE WANG-POLYMER) WAS USED AS A CARRIER. THE SIDE FUNCTIONS OF THE AMINO ACIDS WERE BLOCKED BY THE FOLLOWING PROTECTIVE GROUPS: BUT FOR HYDROXYL FUNCTIONS OF SER AND TYR;
BUT FOR CARBOXYL FUNCTIONS OF ASP AND GLU;
BOC FOR -AMINO FUNCTIONS OF LYS;
TRT FOR CARBOXYLAMIDE GROUP OF ASN, SULFHYDRYL FUNCTIONS OF RESIDUES CYS198 AND CYS220;
ACM FOR SULFHYDRYL FUNCTIONS OF RESIDUES CYS209 AND CYS215, AND PBF FOR GUANIDINE FUNCTION OF ARG. THE AMINO ACID CHAIN WAS ELONGATED STEPWISE STARTING FROM C-TERMINUS USING CARBODIIMIDE IN THE PRESENCE OF 1-HYDROXYBENZOTRIASOLE. WHEN THE SPPS WAS FINISHED, THE PEPTIDE WAS CLEAVED FROM CARRIER WITH THE SIMULTANEOUS REMOVAL OF THE ACID- LABILE PROTECTIVE GROUPS BY TREATMENT WITH TRIFLUORACETIC ACID WITH THE ADDITION OF WATER, TRIISOPROPYLSILANE AND DITHIOTHREITOLE. THE SYNTHESIZED [CYS(ACM)2]PEPTIDE WAS PURIFIED BY HPLC TO A PURITY 85- 90%. THE INTRAMOLECULAR S-S BRIDGE BETWEEN CYS198 AND CYS220 WAS WITH HYDROGEN PEROXIDE AT PH 8. THE TARGET MONOCYCLIC INTERMEDIATE OF PEPTIDE WAS PURIFIED BY HPLC TO A PURITY 90-95%. THE PRODUCT WAS CHARACTERIZED BY MALDI-TOF MASS SPECTROMETRY. THE SECOND DISULFIDE BOND BETWEEN CYS209 AND CYS215 WAS FORMED BY THE TREATMENT OF MONOCYCLIC INTERMEDIATE [CYS(ACM)2]PEPTIDE WITH IODINE (FOR SIMULTANEOUS CLEAVAGE OF ACM GROUP AND FORMATION S-S BRIDGE) IN METHANOL. THE BICYCLIC TARGET PRODUCT WAS PURIFIED BY HPLC TO A PURITY 98% AND CHARACTERIZED BY MALDI-TOF MASS SPECTROMETRY.
    SynonymBETA-1 ADRENORECEPTOR, BETA-1 ADRENOCEPTOR
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LSQ)

(-) Sites  (0, 0)

(no "Site" information available for 2LSQ)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:2 -A:24
2A:13 -A:19

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LSQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LSQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LSQ)

(-) Exons   (0, 0)

(no "Exon" information available for 2LSQ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:25
 aligned with ADRB1_HUMAN | P08588 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:25
                                   206       216     
          ADRB1_HUMAN   197 HWWRAESDEARRCYNDPKCCDFVTN 221
               SCOP domains ------------------------- SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                 2lsq A   1 NCWRAESDEARRCYNDPKCSDSVCK  25
                                    10        20     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LSQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LSQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LSQ)

(-) Gene Ontology  (39, 39)

NMR Structure(hide GO term definitions)
Chain A   (ADRB1_HUMAN | P08588)
molecular function
    GO:0004930    G-protein coupled receptor activity    Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
    GO:0030165    PDZ domain binding    Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins.
    GO:0005088    Ras guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0004935    adrenergic receptor activity    Combining with epinephrine or norepinephrine and transmitting the signal across the membrane by activating the alpha-subunit of an associated heterotrimeric G-protein complex.
    GO:0031694    alpha-2A adrenergic receptor binding    Interacting selectively and non-covalently with an alpha-2A adrenergic receptor.
    GO:0004939    beta-adrenergic receptor activity    Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta-adrenergic receptors; the activity involves transmitting the signal to the Gs alpha subunit of a heterotrimeric G protein.
    GO:0004940    beta1-adrenergic receptor activity    Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta1-adrenergic receptors.
    GO:0051379    epinephrine binding    Interacting selectively and non-covalently with epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine.
    GO:0051380    norepinephrine binding    Interacting selectively and non-covalently with norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0005057    signal transducer activity, downstream of receptor    Conveys a signal from an upstream receptor or intracellular signal transducer, converting the signal into a form where it can ultimately trigger a change in the state or activity of a cell.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0007190    activation of adenylate cyclase activity    Any process that initiates the activity of the inactive enzyme adenylate cyclase.
    GO:0007189    adenylate cyclase-activating G-protein coupled receptor signaling pathway    The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds through activation of adenylyl cyclase activity and a subsequent increase in the concentration of cyclic AMP (cAMP).
    GO:0071880    adenylate cyclase-activating adrenergic receptor signaling pathway    The series of molecular signals generated as a consequence of an adrenergic receptor binding to its physiological ligand, where the pathway proceeds with activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP (cAMP).
    GO:0050873    brown fat cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria.
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0002024    diet induced thermogenesis    The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system.
    GO:0042596    fear response    The response of an organism to a perceived external threat.
    GO:0031649    heat generation    Any homeostatic process in which an organism produces heat, thereby raising its internal temperature.
    GO:0040015    negative regulation of multicellular organism growth    Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organism to reach its usual body size.
    GO:0002025    norepinephrine-epinephrine-mediated vasodilation involved in regulation of systemic arterial blood pressure    A process that results in an increase in the diameter of an artery during the norepinephrine-epinephrine response to blood pressure change.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0030819    positive regulation of cAMP biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).
    GO:0043950    positive regulation of cAMP-mediated signaling    Any process which activates, maintains or increases the frequency, rate or extent of cAMP-mediated signaling, a series of molecular signals in which a cell uses cyclic AMP to convert an extracellular signal into a response.
    GO:0045823    positive regulation of heart contraction    Any process that activates or increases the frequency, rate or extent of heart contraction.
    GO:0001996    positive regulation of heart rate by epinephrine-norepinephrine    The process in which the presence of epinephrine or norepinephrine in the bloodstream activates, maintains or increases the rate of heart contraction.
    GO:0001997    positive regulation of the force of heart contraction by epinephrine-norepinephrine    Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the presence of epinephrine or norepinephrine in the bloodstream or released from the nerve endings.
    GO:0009409    response to cold    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0001659    temperature homeostasis    A homeostatic process in which an organism modulates its internal body temperature.
cellular component
    GO:0005769    early endosome    A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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