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(-) Description

Title :  STRUCTURE AND ORIENTATION OF THE GH625-644 MEMBRANE INTERACTING REGION OF HERPES SIMPLEX VIRUS TYPE 1 IN A MEMBRANE MIMETIC SYSTEM.
 
Authors :  C. Isernia, S. Galdiero, L. Russo, A. Falanga, M. Cantisani, M. Vitiell R. Fattorusso, G. Malgieri, M. Galdiero
Date :  19 Mar 12  (Deposition) - 25 Apr 12  (Release) - 25 Apr 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Galdiero, L. Russo, A. Falanga, M. Cantisani, M. Vitiello, R. Fattorusso, G. Malgieri, M. Galdiero, C. Isernia
Structure And Orientation Of The Gh625-644 Membrane Interacting Region Of Herpes Simplex Virus Type 1 In A Membrane Mimetic System.
Biochemistry V. 51 3121 2012
PubMed-ID: 22397737  |  Reference-DOI: 10.1021/BI201589M

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN H
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 625-644
    Organism Common: HHV-1
    Organism Scientific: HUMAN HERPESVIRUS 1
    Organism Taxid: 10298
    Other Details: SYNTHESIZED IN THE SOLID PHASE
    Synonym: UL22
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:20
 aligned with G8H907_HHV1 | G8H907 from UniProtKB/TrEMBL  Length:838

    Alignment length:20
                                   634       644
          G8H907_HHV1   625 HGLASTLTRWAHYNALIRAF 644
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 2lqy A   1 HGLASTLTRWAHYNALIRAF  20
                                    10        20


Chain A from PDB  Type:PROTEIN  Length:20
 aligned with GH_HHV11 | P06477 from UniProtKB/Swiss-Prot  Length:838

    Alignment length:20
                                   634       644
             GH_HHV11   625 HGLASTLTRWAHYNALIRAF 644
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 2lqy A   1 HGLASTLTRWAHYNALIRAF  20
                                    10        20
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LQY)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (12, 15)

NMR Structure(hide GO term definitions)
Chain A   (G8H907_HHV1 | G8H907)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.

Chain A   (GH_HHV11 | P06477)
biological process
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
cellular component
    GO:0044174    host cell endosome    A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
    GO:0044175    host cell endosome membrane    The lipid bilayer surrounding a host cell endosome.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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