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(-) Description

Title :  REFINED SOLUTION NMR STRUCTURE OF THE 50S RIBOSOMAL PROTEIN L35AE FROM PYROCOCCUS FURIOSUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET (NESG) PFR48
 
Authors :  D. A. Snyder, J. M. Aramini, B. Yu, Y. J. Huang, R. Xiao, J. R. Cort, R. Shas J. Liu, B. Rost, T. B. Acton, M. A. Kennedy, G. T. Montelione, Northeast Structural Genomics Consortium (Nesg)
Date :  02 Feb 12  (Deposition) - 15 Feb 12  (Release) - 20 Jun 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Structural Genomics, Northeast Structural Genomics Consortium (Nesg), Psi-Biology, Protein Structure Initiative, Ribosomal Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Snyder, J. M. Aramini, B. Yu, Y. J. Huang, R. Xiao, J. R. Cort, R. Shastry, L. C. Ma, J. Liu, B. Rost, T. B. Acton, M. A. Kennedy, G. T. Montelione
Solution Nmr Structure Of The Ribosomal Protein Rp-L35Ae From Pyrococcus Furiosus.
Proteins V. 80 1901 2012
PubMed-ID: 22422653  |  Reference-DOI: 10.1002/PROT.24071

(-) Compounds

Molecule 1 - 50S RIBOSOMAL PROTEIN L35AE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PMGK
    Expression System Taxid: 469008
    Expression System Vector: PET21_NESG
    Gene: PF1872, RPL35AE
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LP6)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIBOSOMAL_L35AEPS01105 Ribosomal protein L35Ae signature.RL35A_PYRFU55-76  1A:55-76
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIBOSOMAL_L35AEPS01105 Ribosomal protein L35Ae signature.RL35A_PYRFU55-76  1A:55-76

(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:91
 aligned with RL35A_PYRFU | Q8TZV6 from UniProtKB/Swiss-Prot  Length:87

    Alignment length:91
                                                                                                                 87    
                                    10        20        30        40        50        60        70        80      |  - 
           RL35A_PYRFU    1 MRIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQALGDYVEIV----  -
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee........eeeeeee....hhhhhhh....eeeee.....eeeeeeeeee....eeeeee...........eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------RIBOSOMAL_L35AE       --------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  2lp6 A  1 MRIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQALGDYVEIVLEHH 91
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LP6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LP6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LP6)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (RL35A_PYRFU | Q8TZV6)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL35A_PYRFU | Q8TZV6: 1sqr 4v6u

(-) Related Entries Specified in the PDB File

6173 RELATED ID: NESG-PFR48 RELATED DB: TARGETTRACK
1sqr