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(-) Description

Title :  BACKBONE STRUCTURE OF HUMAN MEMBRANE PROTEIN TMEM14A FROM NOE DATA
 
Authors :  C. Eichmann, C. Klammt, I. Maslennikov, R. Riek, S. Choe
Date :  26 Jan 12  (Deposition) - 23 May 12  (Release) - 15 Aug 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Membrane Protein, Helical Bundle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Klammt, I. Maslennikov, M. Bayrhuber, C. Eichmann, N. Vajpai, E. J. Chiu, K. Y. Blain, L. Esquivies, J. H. Kwon, B. Balana, U. Pieper, A. Sali, P. A. Slesinger, W. Kwiatkowski, R. Riek, S. Choe
Facile Backbone Structure Determination Of Human Membrane Proteins By Nmr Spectroscopy.
Nat. Methods V. 9 834 2012
PubMed-ID: 22609626  |  Reference-DOI: 10.1038/NMETH.2033

(-) Compounds

Molecule 1 - TRANSMEMBRANE PROTEIN 14A
    Chains: A
    Engineered: YES
    Expression System: CELL-FREE SYNTHESIS
    Expression System Vector: P23-GWN
    Gene: TMEM14A, C6ORF73, PTD011
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LOO)

(-) Sites  (0, 0)

(no "Site" information available for 2LOO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LOO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LOO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

NMR Structure (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_052497C37RTM14A_HUMANPolymorphism11543266AC37R
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
NMR Structure * (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_052497C37RTM14A_HUMANPolymorphism11543266AC37R
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LOO)

(-) Exons   (0, 0)

(no "Exon" information available for 2LOO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
 aligned with TM14A_HUMAN | Q9Y6G1 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:99
                                    10        20        30        40        50        60        70        80        90         
           TM14A_HUMAN    1 MDLIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRVSNDKRDVKVSLFTAFFLATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLLL 99
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------R-------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  2loo A  1 MDLIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRVSNDKRDVKVSLFTAFFLATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLLL 99
                                    10        20        30        40        50        60        70        80        90
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LOO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LOO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LOO)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (TM14A_HUMAN | Q9Y6G1)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  2loo
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  TM14A_HUMAN | Q9Y6G1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TM14A_HUMAN | Q9Y6G1: 2lop

(-) Related Entries Specified in the PDB File

2lom 2lon 2lop 2loq