Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)NMR Structure - model 1
(-)NMR Structure - all models
collapse expand < >
Image NMR Structure - model 1
NMR Structure - model 1  (Jmol Viewer)
Image NMR Structure - all models
NMR Structure - all models  (Jmol Viewer)

(-) Description

Title :  NMR SOLUTION STRUCTURE ENSEMBLE OF DOMAIN 11 OF THE ECHIDNA M6P/IGF2R RECEPTOR
 
Authors :  M. Strickland, M. P. Crump, C. Williams, D. Rezgui, R. Z. Ellis, H. Hoppe S. N. Prince, O. J. Zaccheo, B. E. Forbes, E. Jones, A. Z. Hassan, P. Watt
Date :  05 Nov 11  (Deposition) - 07 Nov 12  (Release) - 12 Dec 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Monotreme, Mannose-6-Phosphate, Igf-Ii, Domain 11, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Williams, H. J. Hoppe, D. Rezgui, M. Strickland, B. E. Forbes, F. Grutzner, S. Frago, R. Z. Ellis, P. Wattana-Amorn, S. N. Prince, O. J. Zaccheo, C. M. Nolan, A. J. Mungall, E. Y. Jones, M. P. Crump, A. B. Hassan
An Exon Splice Enhancer Primes Igf2:Igf2R Binding Site Structure And Function Evolution.
Science V. 338 1209 2012
PubMed-ID: 23197533  |  Reference-DOI: 10.1126/SCIENCE.1228633

(-) Compounds

Molecule 1 - MANNOSE-6-PHOSPHATE/INSULIN-LIKE GROWTH FACTOR II RECEPTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET26
    Fragment: DOMAIN 11 RESIDUES 1490-1628
    Gene: IGF2R, M6P/IGF2R
    Organism Common: SHORT-BEAKED ECHIDNA
    Organism Scientific: TACHYGLOSSUS ACULEATUS
    Organism Taxid: 9261

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LLA)

(-) Sites  (0, 0)

(no "Site" information available for 2LLA)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:1494 -A:1531
2A:1537 -A:1544
3A:1576 -A:1612
4A:1592 -A:1624

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LLA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LLA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LLA)

(-) Exons   (0, 0)

(no "Exon" information available for 2LLA)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with Q95LC7_9MAMM | Q95LC7 from UniProtKB/TrEMBL  Length:2473

    Alignment length:140
                                  1498      1508      1518      1528      1538      1548      1558      1568      1578      1588      1598      1608      1618      1628
        Q95LC7_9MAMM   1489 NVQDNCQVTNPATGYVFDLNSLKRESGYTISDIRKGSIRLGVCGEVKDCGPGIGACFEGTGIKAGKWNQKLSYVDQVLQLVYEDGDPCPANLHLKYKSVISFVCKSDAGPTSQPLLLSMDEHTCTLFFSWHTSLACEQEV 1628
               SCOP domains d2llaa_ A: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee......eee.hhh.....eeee.....eeee.....hhhhh..eeeee....eeeee....eeee..eeeeee..............eeeeeeee........eeeeeee.....eeeeeeeehhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2lla A 1489 MVQDNCQVTNPATGYVFDLNSLKRESGYTISDIRKGSIRLGVCGEVKDCGPGIGACFEGTGIKAGKWNQKLSYVDQVLQLVYEDGDPCPANLHLKYKSVISFVCKSDAGPTSQPLLLSVDEHTCTLFFSWHTSLACEQEV 1628
                                  1498      1508      1518      1528      1538      1548      1558      1568      1578      1588      1598      1608      1618      1628
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LLA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LLA)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (Q95LC7_9MAMM | Q95LC7)
molecular function
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

 Visualization

(-) Interactive Views

NMR Structure
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2lla)
 
  Sites
(no "Sites" information available for 2lla)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2lla)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ NMR Structure - model 1 PNG format | NMR Structure - all models PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2lla
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q95LC7_9MAMM | Q95LC7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q95LC7_9MAMM | Q95LC7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2LLA)

(-) Related Entries Specified in the PDB File

7131 SOLUTION STRUCTURE OF IGF2R DOMAIN 11 RELATED ID: 17287 RELATED DB: BMRB NMR SOLUTION STRUCTURE ENSEMBLE OF DOMAIN 11 OF THE ECHIDNA M6P/IGF2R RECEPTOR
2cnj NMR STUDIES ON THE INTERACTION OF INSULIN-GROWTH FACTOR II (IGF-II) WITH IGF2R DOMAIN 11