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(-) Description

Title :  SOLUTION STRUCTURE OF A PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE FROM BACTEROIDES VULGATUS
 
Authors :  R. Harris, R. D. Seidel, B. Hillerich, A. Gizzi, A. Kar, J. Lafleur, S. Ch R. Foti, G. Villegas, B. Evans, W. Zencheck, M. E. Girvin, S. C. Almo, Ne Structural Genomics Research Consortium (Nysgrc)
Date :  09 Sep 11  (Deposition) - 05 Oct 11  (Release) - 05 Oct 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Structural Genomics, Unknown Function, Thioredoxin-Like, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Harris, R. D. Seidel, B. Hillerich, A. Gizzi, A. Kar, J. Lafleur, S. Chamala, R. Foti, G. Villegas, B. Evans, W. Zencheck, M. E. Girvin, S. C. Almo
Solution Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: MODIFIED PET26
    Fragment: UNP RESIDUES 309-449
    Gene: BVU_1977
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482 / DSM 1447 / NCTC 11154

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LJA)

(-) Sites  (0, 0)

(no "Site" information available for 2LJA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LJA)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ile A:109 -Pro A:110

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LJA)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:152
 aligned with A6L1T5_BACV8 | A6L1T5 from UniProtKB/TrEMBL  Length:449

    Alignment length:152
                                                                                                                                                                         449        
                                   315       325       335       345       355       365       375       385       395       405       415       425       435       445   |     -  
         A6L1T5_BACV8   306 EKLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGL--------   -
               SCOP domains d2ljaa_ A: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeee...eeee.......eeeeee.....hhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhh...eeee....hhhhhhh.......eeee.....eee.......hhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2lja A   1 MSLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEGHHHHHH 152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LJA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LJA)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (A6L1T5_BACV8 | A6L1T5)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  Cis Peptide Bonds
    Ile A:109 - Pro A:110   [ RasMol ]  
 

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