2LJ7 - JenaLib

Title :   3D SOLUTION STRUCTURE OF PLANT DEFENSIN LC-DEF

Authors :   Z. Shenkarev, K. Mineev, A. Gizatullina

Date :   07 Sep 11 (Deposition) - 12 Sep 12 (Release) - 14 Oct 15 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. O. Shenkarev, A. K. Gizatullina, E. I. Finkina, E. A. Alekseeva, S. V. Balandin, K. S. Mineev, A. S. Arseniev, T. V. Ovchinnikova
Heterologous Expression And Solution Structure Of Defensin From Lentil Lens Culinaris.
Biochem. Biophys. Res. Commun. V. 451 252 2014
PubMed-ID: 25086358 | Reference-DOI: 10.1016/J.BBRC.2014.07.104

Compounds

Molecule 1 - DEFENSIN LC-DEF
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector	:	PGEM-T
	Organism Common	:	CULTIVATED LENTIL
	Organism Scientific	:	LENS CULINARIS SUBSP. CULINARIS
	Organism Taxid	:	362247

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (5, 5)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

NMR Structure (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAMMA_THIONIN	PS00940	Gamma-thionins family signature.	DEF_LENCC	28-51	1	A:1-24

NMR Structure * (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GAMMA_THIONIN	PS00940	Gamma-thionins family signature.	DEF_LENCC	28-51	1	A:1-24

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:47
 aligned with DEF_LENCC | B3F051 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:47
                                    37        47        57        67       
             DEF_LENCC   28 KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC 74
               SCOP domains d2lj7a_ A: automated matches                    SCOP domains
               CATH domains ----------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author .eeeee............hhhhhhhhh....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE GAMMA_THIONIN           ----------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                  2lj7 A  1 KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC 47
                                    10        20        30        40

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

NMR Structure(hide GO term definitions)

Chain A (DEF_LENCC | B3F051)

biological process
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0050832	defense response to fungus	Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
	GO:0031640	killing of cells of other organism	Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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