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(-) Description

Title :  NMR STRUCTURE OF THE PROTEIN YP_001302112.1 FROM PARABACTEROIDES DISTASONIS
 
Authors :  P. Serrano, B. Mohanty, M. Geralt, K. Wuthrich, Joint Center For Str Genomics (Jcsg)
Date :  22 Jul 11  (Deposition) - 21 Sep 11  (Release) - 21 Sep 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Apsy Spectroscopy, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Calcium-Binding Protein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Serrano, B. Mohanty, M. Geralt, K. Wuthrich
Nmr Structure Of The Protein Yp_001302112. 1 From Parabacteroides Distasonis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector: PSPEEDET
    Fragment: SEQUENCE DATABASE RESIDUES 24-151
    Gene: BDI_0720
    Organism Scientific: PARABACTEROIDES DISTASONIS
    Organism Taxid: 435591
    Strain: ATCC 8503 / DSM 20701 / NCTC 11152

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LG7)

(-) Sites  (0, 0)

(no "Site" information available for 2LG7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LG7)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Ser A:50 -Pro A:51

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LG7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LG7)

(-) Exons   (0, 0)

(no "Exon" information available for 2LG7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with A6L9X6_PARD8 | A6L9X6 from UniProtKB/TrEMBL  Length:151

    Alignment length:129
                                    32        42        52        62        72        82        92       102       112       122       132       142         
         A6L9X6_PARD8    23 KDDDEPGGKGAMYEVTIEQSGDFRSFIKSVVVVANGTQLKDGATGESLASPVILSDEELAVEKVTLSTTGKAIEFAVSGGVVDGEDGVVNEPMQWVVTVYKNGKEIEKKSLVFRDGKEISTDDLNLYYN 151
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeee.....ee..........ee......ee......hhhhh...eeeeee......ee....ee..........eeeeeeeee..eeeeeeeeee.............ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2lg7 A   1 GDDDEPGGKGAMYEVTIEQSGDFRSFIKSVVVVANGTQLKDGATGESLASPVILSDEELAVEKVTLSTTGKAIEFAVSGGVVDGEDGVVNEPMQWVVTVYKNGKEIEKKSLVFRDGKEISTDDLNLYYN 129
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LG7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LG7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LG7)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2LG7)

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  Cis Peptide Bonds
    Ser A:50 - Pro A:51   [ RasMol ]  
 

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  2lg7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A6L9X6_PARD8 | A6L9X6: 2lge

(-) Related Entries Specified in the PDB File

2lge CALCIUM-BOUND FORM RELATED ID: 394811 RELATED DB: TARGETDB