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(-) Description

Title :  THE STRUCTURE OF A N. MENINGITIDES PROTEIN TARGETED FOR VACCINE DEVELOPMENT
 
Authors :  V. Esposito, V. Musi, C. De Chiara, G. Kelly, D. Veggi, M. Pizza, A. Past
Date :  15 Jul 11  (Deposition) - 19 Oct 11  (Release) - 28 Dec 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Beta-Barrel, Antigen, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Esposito, V. Musi, C. De Chiara, D. Veggi, D. Serruto, M. Scarselli G. Kelly, M. Pizza, A. Pastore
Structure Of The C-Terminal Domain Of Neisseria Heparin Binding Antigen (Nhba), One Of The Main Antigens Of A Novel Vaccine Against Neisseria Meningitidis.
J. Biol. Chem. V. 286 41767 2011
PubMed-ID: 21965688  |  Reference-DOI: 10.1074/JBC.M111.289314

(-) Compounds

Molecule 1 - GNA2132
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)-PLYSS
    Expression System Taxid: 469008
    Expression System Vector: PET21B+
    Fragment: SEQUENCE DATABASE RESIDUES 246-428
    Gene: GNA2132
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 487
    Synonym: PUTATIVE LIPOPROTEIN GNA2132

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LFU)

(-) Sites  (0, 0)

(no "Site" information available for 2LFU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LFU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LFU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LFU)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2LFU)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with Q9JPI1_NEIME | Q9JPI1 from UniProtKB/TrEMBL  Length:427

    Alignment length:160
                                                                                                                                                                                 427        
                                   285       295       305       315       325       335       345       355       365       375       385       395       405       415       425 |       -
         Q9JPI1_NEIME   276 NIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD--------   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeee.....eeeee............eeeeeeeeee..........eeeeeeeeee....eeeeeee.........eeeeeee...eeeeee.....eeeeeee......eeeeeeee...........eeeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2lfu A 276 NIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQDLEHHHHHH 435
                                   285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435


Chain A from PDB  Type:PROTEIN  Length:160
 aligned with Q9JPP1_NEIME | Q9JPP1 from UniProtKB/TrEMBL  Length:427

    Alignment length:160
                                                                                                                                                                                 427        
                                   285       295       305       315       325       335       345       355       365       375       385       395       405       415       425 |       -
         Q9JPP1_NEIME   276 NIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD--------   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeee.....eeeee............eeeeeeeeee..........eeeeeeeeee....eeeeeee.........eeeeeee...eeeeee.....eeeeeee......eeeeeeee...........eeeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2lfu A 276 NIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQDLEHHHHHH 435
                                   285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LFU)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LFU)

(-) Gene Ontology  (2, 4)

NMR Structure(hide GO term definitions)
Chain A   (Q9JPI1_NEIME | Q9JPI1)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A   (Q9JPP1_NEIME | Q9JPP1)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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