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(-) Description

Title :  SOLUTION STRUCTURE OF THE PROTEIN YP_546394.1, THE FIRST STRUCTURAL REPRESENTATIVE OF THE PFAM FAMILY PF12112
 
Authors :  B. Mohanty, P. Serrano, M. Geralt, R. Horst, K. Wuthrich, Joint Center Structural Genomics (Jcsg)
Date :  08 Feb 11  (Deposition) - 16 Mar 11  (Release) - 03 Aug 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Pg9854E, Structural Genomics, Psi-Biology, Protein Structure Initiative, Unknown Function, Joint Center For Structural Genomics, Jcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Mohanty, P. Serrano, M. Geralt, R. Horst, K. Wuthrich
Solution Structure Of The Protein Yp_546394. 1, The First Structural Representative Of The Pfam Family Pf12112
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PSPEEDET
    Gene: MFLA_2286
    Organism Scientific: METHYLOBACILLUS FLAGELLATUS
    Organism Taxid: 265072
    Strain: KT / ATCC 51484 / DSM 6875

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L9D)

(-) Sites  (0, 0)

(no "Site" information available for 2L9D)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L9D)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Arg A:26 -Pro A:27

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
 aligned with Q1GYY4_METFK | Q1GYY4 from UniProtKB/TrEMBL  Length:107

    Alignment length:108
                             1                                                                                                          
                             |       9        19        29        39        49        59        69        79        89        99        
         Q1GYY4_METFK     - -MGTTEKSGIKEIIIQGLTRAGKPFRPSDWVDRMCSTYASFGADRKLRYSPYLKPRVIEGVRCLAVDLKLKDTNPEGFNQLMHFATENQLNILDAEGNSIDAAQVTEI 107
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----DUF3579-2l9dA01 A:6-98                                                                       ---------- Pfam domains
         Sec.struct. author ...........eeeeeeee.........hhhhhhhhh..ee.....ee....eee........eeeehhhhhhhhhhhhhhhhhhhhhheeeee......hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2l9d A   1 GMGTTEKSGIKEIIIQGLTRAGKPFRPSDWVDRMCSTYASFGADRKLRYSPYLKPRVIEGVRCLAVDLKLKDTNPEGFNQLMHFATENQLNILDAEGNSIDAAQVTEI 108
                                    10        20        30        40        50        60        70        80        90       100
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L9D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L9D)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: DUF3579] (1)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2L9D)

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  Cis Peptide Bonds
    Arg A:26 - Pro A:27   [ RasMol ]  
 

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 Related Entries

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