2L9B - JenaLib

NMR Structure - model 1 (Jmol Viewer)

NMR Structure - all models (Jmol Viewer)

Title :   HETERODIMER BETWEEN RNA14P MONKEYTAIL DOMAIN AND RNA15P HINGE DOMAIN OF THE YEAST CF IA COMPLEX

Authors :   M. Moreno-Morcillo, L. Minvielle-Sebastia, S. Fribourg, C. D. Macker

Date :   07 Feb 11 (Deposition) - 27 Apr 11 (Release) - 27 Apr 11 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (10x)
NMR Structure *: A,B  (1x)

Keywords :   3' End Mrna Maturation, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Moreno-Morcillo, L. Minvielle-Sebastia, S. Fribourg, C. D. Mackereth
Locked Tether Formation By Cooperative Folding Of Rna14P Monkeytail And Rna15P Hinge Domains In The Yeast Cf Ia Complex.
Structure V. 19 534 2011
PubMed-ID: 21481776 | Reference-DOI: 10.1016/J.STR.2011.02.003

Molecule 1 - MRNA 3'-END-PROCESSING PROTEIN RNA15
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21PLYSY
	Expression System Taxid	:	562
	Expression System Vector	:	PET-MCN-HIS
	Fragment	:	SEQUENCE DATABASE RESIDUES 127-232
	Gene	:	RNA15, YGL044C
	Organism Common	:	YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Other Details	:	N-TERMINAL HIS6-TAG FOLLOWED BY TEV PROTEASE CLEAVAGE SITE. CO-EXPRESSED WITH RNA14P

Molecule 2 - MRNA 3'-END-PROCESSING PROTEIN RNA14
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21PLYSY
	Expression System Taxid	:	562
	Expression System Vector	:	PCDF
	Fragment	:	C-TERMINAL RESIDUES 626-677
	Gene	:	RNA14, YMR061W, YM9796.14
	Organism Common	:	YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Other Details	:	CO-EXPRESSED WITH RNA14P

		1	2
NMR Structure (10x)	:	A	B
NMR Structure * (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2L9B)

(no "Site" information available for 2L9B)

(no "SS Bond" information available for 2L9B)

(no "Cis Peptide Bond" information available for 2L9B)

(no "SAP(SNP)/Variant" information available for 2L9B)

(no "PROSITE Motif" information available for 2L9B)

(no "Exon" information available for 2L9B)

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:91
 aligned with RNA15_YEAST | P25299 from UniProtKB/Swiss-Prot  Length:296

    Alignment length:91
                                   147       157       167       177       187       197       207       217       227 
          RNA15_YEAST   138 ANFLSQKFPELPSGIDVNINMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAVSLLELCPQLSFVTAELLLTNGICKVDDLIPLA 228
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...............hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 2l9b A 138 ANFLSQKFPELPSGIDVNINMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAASLLELCPQLSFVTAELLLTNGICKVDDLIPLA 228
                                   147       157       167       177       187       197       207       217       227

Chain B from PDB  Type:PROTEIN  Length:40
 aligned with RNA14_YEAST | P25298 from UniProtKB/Swiss-Prot  Length:677

    Alignment length:40
                                   639       649       659       669
          RNA14_YEAST   630 ELPTEVLDLLSVIPKRQYFNTNLLDAQKLVNFLNDQVEIP 669
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains ---------------------------------------- CATH domains
               Pfam domains Suf-2l9bB01 B:630-669                    Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.hhhhhh....hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 2l9b B 630 ELPTEVLDLLSVIPKRQYFNTNLLDAQKLVNFLNDQVEIP 669
                                   639       649       659       669

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2L9B)

(no "CATH Domain" information available for 2L9B)

NMR Structure

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TPR (230)

Family: Suf (4)

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast) (1)

Suf-2l9bB01

B:630-669

NMR Structure(hide GO term definitions)

Chain A (RNA15_YEAST | P25299)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003729	mRNA binding	Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0031124	mRNA 3'-end processing	Any process involved in forming the mature 3' end of an mRNA molecule.
	GO:0006378	mRNA polyadenylation	The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
	GO:0006397	mRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
	GO:0098789	pre-mRNA cleavage required for polyadenylation	The targeted, endonucleolytic cleavage of a pre-mRNA, required for polyadenylation of the 3' end. This cleavage is directed by binding sites near the 3' end of the mRNA and leaves a 3' hydoxyl end which then becomes a target for adenylation.
	GO:0072423	response to DNA damage checkpoint signaling	A process that occurs in response to signals generated as a result of DNA damage checkpoint signaling.
cellular component
	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal.
	GO:0005849	mRNA cleavage factor complex	Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B (RNA14_YEAST | P25298)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003729	mRNA binding	Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0006396	RNA processing	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
	GO:0006378	mRNA polyadenylation	The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
	GO:0006397	mRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
	GO:0098789	pre-mRNA cleavage required for polyadenylation	The targeted, endonucleolytic cleavage of a pre-mRNA, required for polyadenylation of the 3' end. This cleavage is directed by binding sites near the 3' end of the mRNA and leaves a 3' hydoxyl end which then becomes a target for adenylation.
	GO:0072423	response to DNA damage checkpoint signaling	A process that occurs in response to signals generated as a result of DNA damage checkpoint signaling.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005849	mRNA cleavage factor complex	Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

NMR Structure
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	RNA15_YEAST \| P25299	:	2km8 2x1a 2x1b 2x1f

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