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(-) Description

Title :  SOLUTION STRUCTURE OF HUMAN PROTEIN C6ORF130 IN COMPLEX WITH ADP-RIBOSE
 
Authors :  B. L. Lytle, F. C. Peterson, B. F. Volkman, Center For Eukaryotic Str Genomics (Cesg)
Date :  22 Jan 11  (Deposition) - 23 Feb 11  (Release) - 26 Oct 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Macro Domain, Structural Genomics, Protein Structure Initiative, Psi- 2, Center For Eukaryotic Structural Genomics, Cesg, Deacylase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. C. Peterson, D. Chen, B. L. Lytle, M. N. Rossi, I. Ahel, J. M. Denu, B. F. Volkman
Orphan Macrodomain Protein (Human C6Orf130) Is An O-Acyl-Adp-Ribose Deacylase: Solution Structure And Catalytic Properties.
J. Biol. Chem. V. 286 35955 2011
PubMed-ID: 21849506  |  Reference-DOI: 10.1074/JBC.M111.276238

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN C6ORF130
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: SG13009[PREP4]
    Expression System Taxid: 562
    Expression System Vector: PQE30
    Gene: C6ORF130
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1APR1Ligand/IonADENOSINE-5-DIPHOSPHORIBOSE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1APR1Ligand/IonADENOSINE-5-DIPHOSPHORIBOSE

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:20 , LEU A:21 , PHE A:22 , CYS A:33 , ILE A:34 , SER A:35 , ARG A:39 , ILE A:44 , LEU A:47 , THR A:83 , PRO A:91 , PRO A:118 , ARG A:119 , ILE A:120 , GLY A:123 , LEU A:124 , ASP A:125 , LEU A:152BINDING SITE FOR RESIDUE APR A 186

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L8R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L8R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L8R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2L8R)

(-) Exons   (0, 0)

(no "Exon" information available for 2L8R)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:150
 aligned with OARD1_HUMAN | Q9Y530 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:150
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152
          OARD1_HUMAN     3 SSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL 152
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeee.hhhhh....eeeeee.........hhhhhhhhhhhhhhhhhhh.....eeeeee..eeeeeee.........hhhhhhhhhhhhhhhhhhhh..eeee..........hhhhhhhhhhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2l8r A   3 SSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL 152
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L8R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L8R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2L8R)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (OARD1_HUMAN | Q9Y530)
molecular function
    GO:0019213    deacetylase activity    Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0001883    purine nucleoside binding    Interacting selectively and non-covalently with a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose.
biological process
    GO:0042278    purine nucleoside metabolic process    The chemical reactions and pathways involving one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).

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  2l8r
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  OARD1_HUMAN | Q9Y530
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OARD1_HUMAN | Q9Y530: 2eee 2lgr 4j5q 4j5r 4j5s

(-) Related Entries Specified in the PDB File

2jyc UNBOUND C6ORF130 RELATED ID: 15593 RELATED DB: BMRB UNBOUND C6ORF130 RELATED ID: 17421 RELATED DB: BMRB RELATED ID: GO.36728 RELATED DB: TARGETDB
2lgr