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(-) Description

Title :  HADDOCK CALCULATED MODEL OF THE COMPLEX OF THE RESISTANCE PROTEIN CALC AND CALICHEAMICIN-GAMMA
 
Authors :  S. Singh, J. L. Markley, J. S. Thorson, Center For Eukaryotic Struct Genomics (Cesg)
Date :  15 Nov 10  (Deposition) - 02 Mar 11  (Release) - 23 Mar 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (4x)
NMR Structure *:  A  (1x)
Keywords :  Resistance Protein, Structural Genomics, Psi-1, Protein Structure Initiative, Center For Eukaryotic Structural Genomics, Cesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Singh, M. H. Hager, C. Zhang, B. R. Griffith, M. S. Lee, K. Hallenga, J. L. Markley, J. S. Thorson
Structural Insight Into The Self-Sacrifice Mechanism Of Enediyne Resistance.
Acs Chem. Biol. V. 1 451 2006
PubMed-ID: 17168523  |  Reference-DOI: 10.1021/CB6002898

(-) Compounds

Molecule 1 - CALC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET21A
    Fragment: SEQUENCE DATABASE RESIDUES 27-181
    Gene: CALC
    Organism Scientific: MICROMONOSPORA ECHINOSPORA
    Organism Taxid: 1877

 Structural Features

(-) Chains, Units

  1
NMR Structure (4x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 24)

NMR Structure (6, 24)
No.NameCountTypeFull Name
1DAG4Ligand/Ion4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPYRANOSIDE
2DSR4Ligand/Ion2,6-DIDEOXY-4-THIO-BETA-D-ALLOSEPYRANOSIDE
3EMP4Ligand/Ion2,4-DIDEOXY-4-(ETHYLAMINO)-3-O-METHYL ALPHA-L-THREO-PENTOPYRANOSIDE
4HIB4Ligand/Ion4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID
5MRP4Ligand/Ion3-O-METHYL-ALPHA-L-RHAMNOPYRANOSIDE
6MTC4Ligand/Ion[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER
NMR Structure * (6, 6)
No.NameCountTypeFull Name
1DAG1Ligand/Ion4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPYRANOSIDE
2DSR1Ligand/Ion2,6-DIDEOXY-4-THIO-BETA-D-ALLOSEPYRANOSIDE
3EMP1Ligand/Ion2,4-DIDEOXY-4-(ETHYLAMINO)-3-O-METHYL ALPHA-L-THREO-PENTOPYRANOSIDE
4HIB1Ligand/Ion4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID
5MRP1Ligand/Ion3-O-METHYL-ALPHA-L-RHAMNOPYRANOSIDE
6MTC1Ligand/Ion[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER

(-) Sites  (6, 6)

NMR Structure (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:86 , DSR A:625 , EMP A:628 , MTC A:629BINDING SITE FOR RESIDUE DAG A 621
2AC2SOFTWAREASN A:84 , GLY A:85 , DAG A:621 , HIB A:626BINDING SITE FOR RESIDUE DSR A 625
3AC3SOFTWAREHIS A:63 , THR A:64 , PHE A:65 , MET A:133 , DSR A:625 , MRP A:627BINDING SITE FOR RESIDUE HIB A 626
4AC4SOFTWAREPHE A:65 , MET A:133 , LYS A:135 , GLY A:136 , TRP A:137 , HIB A:626BINDING SITE FOR RESIDUE MRP A 627
5AC5SOFTWAREDAG A:621BINDING SITE FOR RESIDUE EMP A 628
6AC6SOFTWAREPHE A:86 , GLY A:87 , DAG A:621BINDING SITE FOR RESIDUE MTC A 629

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L65)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L65)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L65)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2L65)

(-) Exons   (0, 0)

(no "Exon" information available for 2L65)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with Q8KNF0_MICEC | Q8KNF0 from UniProtKB/TrEMBL  Length:181

    Alignment length:155
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176     
         Q8KNF0_MICEC    27 NYDPFVRHSVTVKADRKTAFKTFLEGFPEWWPNNFRTTKVGAPLGVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEEGAKK 181
               SCOP domains d2l65a1 A:1-155 Calicheamicin gene cluster protein CalC                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------AHSA1-2l65A01 A:13-148                                                                                                                  ------- Pfam domains
         Sec.struct. author ........eeee..hhhhhhhhhhh...................eee....eee.ee..ee....eeeeeee...eeeeee.............eeeeeeeeee...eeeeeee........hhhhhhhh.hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2l65 A   1 NYDPFVRHSVTVKADRKTAFKTFLEGFPEWWPNNFRTTKVGAPLGVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEEGAKK 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L65)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2L65)

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  2l65
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8KNF0_MICEC | Q8KNF0: 1zxf 2gkd

(-) Related Entries Specified in the PDB File

1zxf SOLUTION STRUCTURE OF CALC
2pik SOLUTION STRUCTURE OF COMPLEX OF DNA AND CALICHEAMICIN-GAMMA RELATED ID: GO.79751 RELATED DB: TARGETDB