2L3I - JenaLib

Title :   OXKI4A, SPIDER DERIVED ANTIMICROBIAL PEPTIDE

Authors :   A. A. Vassilevski, P. V. Dubovskii, O. V. Samsonova, N. S. Egorova, S. A. A. V. Feofanov, A. S. Arseniev, E. V. Grishin

Date :   14 Sep 10 (Deposition) - 14 Sep 11 (Release) - 07 Mar 12 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Antimicrobial Peptide, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. V. Dubovskii, A. A. Vassilevski, O. V. Samsonova, N. S. Egorova, S. A. Kozlov, A. V. Feofanov, A. S. Arseniev, E. V. Grishin
Novel Lynx Spider Toxin Shares Common Molecular Architectur With Defense Peptides From Frog Skin.
Febs J. V. 278 4382 2011
PubMed-ID: 21933345 | Reference-DOI: 10.1111/J.1742-4658.2011.08361.X

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:30
 aligned with TOP4A_OXYTA | F8J4S0 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:30
                                    57        67        77
           TOP4A_OXYTA   48 GIRCPKSWKCKAFKQRVLKRLLAMLRQHAF 77
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  2l3i A  1 GIRCPKSWKCKAFKQRVLKRLLAMLRQHAF 30
                                    10        20        30

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

NMR Structure(hide GO term definitions)

Chain A (TOP4A_OXYTA | F8J4S0)

biological process
	GO:0019835	cytolysis	The rupture of cell membranes and the loss of cytoplasm.
	GO:0050829	defense response to Gram-negative bacterium	Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
	GO:0050830	defense response to Gram-positive bacterium	Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0044179	hemolysis in other organism	The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0044218	other organism cell membrane	The cell membrane of a secondary organism with which the first organism is interacting.
	GO:0044279	other organism membrane	A membrane of a secondary organism with which the first organism is interacting.

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