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(-) Description

Title :  SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF NP_954075.1
 
Authors :  L. Susac, P. Serrano, M. Geralt, K. Wuthrich, Joint Center For Struc Genomics (Jcsg)
Date :  05 Aug 10  (Deposition) - 18 Aug 10  (Release) - 03 Aug 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Putative C-Di-Gmp Binding, Gsu3033, Pilz, Structural Genomics, Psi- Biology, Protein Structure Initiative, Joint Center For Structural Genomics, Jcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Susac, P. Serrano, M. Geralt, K. Wuthrich
Nmr Structure Of The Protein Np_954075. 1 From Geobacter Sulfurreducens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector: PSPEEDET
    Fragment: N-TERMINAL RESIDUES 1-108
    Gene: GSU3033
    Organism Scientific: GEOBACTER SULFURREDUCENS
    Organism Taxid: 35554

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L1T)

(-) Sites  (0, 0)

(no "Site" information available for 2L1T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L1T)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with Q748G9_GEOSL | Q748G9 from UniProtKB/TrEMBL  Length:267

    Alignment length:109
                             1                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99         
         Q748G9_GEOSL     - -MSADGSEYGRYFEQLQKVNLTVRLGDTGSFDGTAAITSLKGSLAWLELFGAEQPPPNTLSEGAEVSVSVWTGGALCRCDGRVETLRDDRQFAIRLVGRVRELQRREYF 108
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------PilZ-2 Pfam domains
         Sec.struct. author .......hhhhh.....eeeeeeee...eeeeeeeeeeeee..eeee.................eeeeeeee..eeeeeeee.........eeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2l1t A   1 GMSADGSEYGRYFEQLQKVNLTVRLGDTGSFDGTAAITSLKGSLAWLELFGAEQPPPNTLSEGAEVSVSVWTGGALCRCDGRVETLRDDRQFAIRLVGRVRELQRREYF 109
                                    10        20        30        40        50        60        70        80        90       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L1T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L1T)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: PilZ] (4)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (Q748G9_GEOSL | Q748G9)
molecular function
    GO:0035438    cyclic-di-GMP binding    Interacting selectively and non-covalently with cyclic-di-GMP, cyclic dimeric guanosine monophosphate.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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