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(-) Description

Title :  SOLUTION NMR STRUCTURE OF THE THERMOTOGA MARITIMA PROTEIN TM0855 A PUTATIVE RIBOSOME BINDING FACTOR A
 
Authors :  P. Serrano, K. Jaudzems, R. Horst, I. A. Wilson, K. Wuthrich, Joint Cen Structural Genomics (Jcsg)
Date :  16 Jun 10  (Deposition) - 11 Aug 10  (Release) - 20 Mar 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Jcsg, Joint Center Structural Genomics, Protein Structure Initiative, Joint Center For Structural Genomics, Psi, Ribosomal Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Serrano, K. Jaudzems, R. Horst, I. A. Wilson, K. Wuthrich
Solution Nmr Structure Of The Thermotoga Maritima Protein Tm0855
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBOSOME-BINDING FACTOR A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET25B
    Fragment: SEQUENCE DATABASE RESIDUES 1-105
    Gene: RBFA, TM_0855
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Synonym: RBFA

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KZF)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RBFAPS01319 Ribosome-binding factor A signature.RBFA_THEMA76-97  1A:77-98
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RBFAPS01319 Ribosome-binding factor A signature.RBFA_THEMA76-97  1A:77-98

(-) Exons   (0, 0)

(no "Exon" information available for 2KZF)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
 aligned with RBFA_THEMA | Q9WZV9 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:106
                             1                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99      
           RBFA_THEMA     - -MNPAYRKAMLESEIQKLLMEALQQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKETVEILNRAKGFFRTFIAKNLRLYVAPEIRFYEDKGIEASVK 105
               SCOP domains d2kzfa_ A: automated matches                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------RBFA-2kzfA01 A:7-106                                                                                 Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhh......hhhhh.eeeeee.....eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------RBFA  PDB: A:77-98    -------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 2kzf A   1 GMNPAYRKAMLESEIQKLLMEALQQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKETVEILNRAKGFFRTFIAKNLRLYVAPEIRFYEDKGIEASVK 106
                                    10        20        30        40        50        60        70        80        90       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KZF)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: RBFA] (3)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (RBFA_THEMA | Q9WZV9)
biological process
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2kzf
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