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(-) Description

Title :  SOLUTION STRUCTURE OF THE E.COLI RCSD-ABL DOMAIN (RESIDUES 688-795)
 
Authors :  V. V. Rogov, K. Schmoee, N. Y. Rogova, F. Loehr, F. Bernhard, V. Doetsch
Date :  27 Apr 10  (Deposition) - 06 Apr 11  (Release) - 27 Apr 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (25x)
NMR Structure *:  A  (1x)
Keywords :  Alpha-Beta-Loop (Abl) Domain, Phosphotransfer, Rcs Regulation, Rcsd, Two-Component System, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Schmoe, V. V. Rogov, N. Y. Rogova, F. Lohr, P. Guntert, F. Bernhard, V. Dotsch
Structural Insights Into Rcs Phosphotransfer: The Newly Identified Rcsd-Abl Domain Enhances Interaction With The Response Regulator Rcsb.
Structure V. 19 577 2011
PubMed-ID: 21481780  |  Reference-DOI: 10.1016/J.STR.2011.01.012

(-) Compounds

Molecule 1 - SENSOR-LIKE HISTIDINE KINASE YOJN
    ChainsA
    EC Number2.7.13.3
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE60
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneB2216, JW2204, YOJN, YOJP, YOJQ
    Organism ScientificESCHERICHIA COLI
    Organism Taxid83333
    StrainK12
    SynonymPHOSPHOTRANSFER INTERMEDIATE YOJN

 Structural Features

(-) Chains, Units

  1
NMR Structure (25x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KX7)

(-) Sites  (0, 0)

(no "Site" information available for 2KX7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KX7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KX7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KX7)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.RCSD_ECOLI803-890  1A:797-797
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPTPS50894 Histidine-containing phosphotransfer (HPt) domain profile.RCSD_ECOLI803-890  1A:797-797

(-) Exons   (0, 0)

(no "Exon" information available for 2KX7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:111
 aligned with RCSD_ECOLI | P39838 from UniProtKB/Swiss-Prot  Length:890

    Alignment length:122
                                   696       706       716       726       736       746       756       766       776       786       796       806  
           RCSD_ECOLI   687 EERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNPSNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLGGDENAQLHAS 808
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..hhhhhhhhhhhhhhh.eeee............eeeee.hhhh...eeee......eeeee..eeee...hhhhhhhhhhhhhhhhhhh......-----------.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------HPT    PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 2kx7 A 687 MERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNPSNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTES-----------RS 797
                                   696       706       716       726       736       746       756       766       776       786        |-         -| 
                                                                                                                                      795         796 

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  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KX7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KX7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2KX7)

(-) Gene Ontology  (15, 15)

NMR Structure(hide GO term definitions)
Chain A   (RCSD_ECOLI | P39838)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0009927    histidine phosphotransfer kinase activity    Serves as a phospho-His intermediate enabling the transfer of phospho group between a hybrid kinase and a response regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016774    phosphotransferase activity, carboxyl group as acceptor    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a carboxyl group (acceptor).
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0018106    peptidyl-histidine phosphorylation    The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine).
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RCSD_ECOLI | P398381sr2

(-) Related Entries Specified in the PDB File

1sr2 SOLUTION STRUCTURE OF THE ESCHERICHIA COLI YOJN HISTIDINE- PHOSPHOTRANSFERASE (HPT) DOMAIN