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(-) Description

Title :  NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF VP7
 
Authors :  S. Elaid, S. Libersou, J. Lepault, N. Morellet, S. Bouaziz
Date :  17 Mar 10  (Deposition) - 30 Mar 11  (Release) - 30 Mar 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Capsid Protein, Host Endoplasmic Reticulum, Virion, C Terminal Domain, Membrane Destabilisation, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Elaid, S. Libersou, J. Lepault, N. Morellet, S. Bouaziz
Nmr Structure Of The C-Terminal Domain Of Vp7
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MAJOR OUTER CAPSID PROTEIN VP7
    Chains: A
    Engineered: YES
    Fragment: C-TERMINAL DOMAIN
    Organism Common: HUMAN GROUP A ROTAVIRUS
    Organism Scientific: HUMAN ROTAVIRUS A
    Organism Taxid: 10941
    Other Details: THE PEPTIDE SYNTHESIZED BY AUTOMATED SOLID PHASE USING FMOC STRATEGY AND PURIFIED BY REVERSE PHASE HPLC
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KVL)

(-) Sites  (0, 0)

(no "Site" information available for 2KVL)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KVL)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:61
 aligned with Q6SKR8_9REOV | Q6SKR8 from UniProtKB/TrEMBL  Length:326

    Alignment length:61
                                   275       285       295       305       315       325 
         Q6SKR8_9REOV   266 SDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQLMSKRSRSLNSAAFYYRV 326
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains VP7-2kvlA01 A:1-61                                            Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 2kvl A   1 SDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQLMSKRSRSLNSAAFYYRV  61
                                    10        20        30        40        50        60
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KVL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KVL)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Rotavirus_VP7 (1)

(-) Gene Ontology  (8, 8)

NMR Structure(hide GO term definitions)
Chain A   (Q6SKR8_9REOV | Q6SKR8)
cellular component
    GO:0039621    T=13 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=13 symmetry. The T=13 capsid is composed of 12 pentameric and 120 hexameric capsomeres.
    GO:0044165    host cell endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0044166    host cell endoplasmic reticulum lumen    The volume enclosed by the membranes of the host cell endoplasmic reticulum.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0039624    viral outer capsid    The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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