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(-) Description

Title :  SOLUTION STRUCTURE OFRGS12 PDZ DOMAIN
 
Authors :  G. Lu, P. Ji, H. Huang
Date :  10 Mar 10  (Deposition) - 02 Mar 11  (Release) - 02 Mar 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Pdz Domain, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Lu, J. Zhang, P. Ji, Y. Shi
Determining The Molecular Basis For The Ph-Dependent Interaction Between The Pdz Of Human Rgs12 And Mek2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - REGULATOR OF G-PROTEIN SIGNALING 12
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System VectorPET22B(+)
    Expression System Vector TypeVECTOR
    FragmentPDZ DOMAIN, UNP RESIDUES 18-100
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRGS12

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KV8)

(-) Sites  (0, 0)

(no "Site" information available for 2KV8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KV8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KV8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KV8)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.RGS12_HUMAN22-99  1A:5-82
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.RGS12_HUMAN22-99  1A:5-82

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000003447332ENSE00001493387chr4:3315874-3316676803RGS12_HUMAN-00--
1.3bENST000003447333bENSE00001425932chr4:3317797-33197781982RGS12_HUMAN1-6276271A:1-8383
1.5aENST000003447335aENSE00001424736chr4:3344664-3344780117RGS12_HUMAN628-666390--
1.11bENST0000034473311bENSE00001364020chr4:3388143-338816422RGS12_HUMAN667-67480--
1.12eENST0000034473312eENSE00002166986chr4:3415799-3415968170RGS12_HUMAN674-730570--
1.12hENST0000034473312hENSE00001306820chr4:3416479-341657193RGS12_HUMAN731-761310--
1.13ENST0000034473313ENSE00001327870chr4:3417705-3417848144RGS12_HUMAN762-809480--
1.14bENST0000034473314bENSE00001320836chr4:3418640-3418819180RGS12_HUMAN810-869600--
1.15cENST0000034473315cENSE00001303268chr4:3419115-3419268154RGS12_HUMAN870-921520--
1.16bENST0000034473316bENSE00001330505chr4:3422369-342244577RGS12_HUMAN921-946260--
1.17cENST0000034473317cENSE00001290168chr4:3424103-3424297195RGS12_HUMAN947-1011650--
1.18aENST0000034473318aENSE00001305356chr4:3424632-342470574RGS12_HUMAN1012-1036250--
1.19aENST0000034473319aENSE00001310989chr4:3425242-3425368127RGS12_HUMAN1036-1078430--
1.20bENST0000034473320bENSE00001291684chr4:3427191-342728797RGS12_HUMAN1079-1111330--
1.22dENST0000034473322dENSE00001327663chr4:3429817-342989680RGS12_HUMAN1111-1137270--
1.22gENST0000034473322gENSE00001305978chr4:3430285-3430438154RGS12_HUMAN1138-1189520--
1.23bENST0000034473323bENSE00001696889chr4:3432134-3432682549RGS12_HUMAN1189-13721840--
1.24aENST0000034473324aENSE00002077237chr4:3441182-3441632451RGS12_HUMAN1372-1447760--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:83
 aligned with RGS12_HUMAN | O14924 from UniProtKB/Swiss-Prot  Length:1447

    Alignment length:83
                                    27        37        47        57        67        77        87        97   
          RGS12_HUMAN    18 PRVRSVEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGVG 100
               SCOP domains d2kv8a_ A: automated matches                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----PDZ-2kv8A01 A:5-79                                                         ---- Pfam domains
         Sec.struct. author ..eeeeee.....................................eeeee..ee....hhhhhhhhhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----PDZ  PDB: A:5-82 UniProt: 22-99                                               - PROSITE
               Transcript 1 Exon 1.3b  PDB: A:1-83 UniProt: 1-627 [INCOMPLETE]                                  Transcript 1
                 2kv8 A   1 PRVRSVEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGVG  83
                                    10        20        30        40        50        60        70        80   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KV8)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: PDZ-like (184)

(-) Gene Ontology  (24, 24)

NMR Structure(hide GO term definitions)
Chain A   (RGS12_HUMAN | O14924)
molecular function
    GO:0001965    G-protein alpha-subunit binding    Interacting selectively and non-covalently with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide.
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0030695    GTPase regulator activity    Modulates the rate of GTP hydrolysis by a GTPase.
    GO:0005057    signal transducer activity, downstream of receptor    Conveys a signal from an upstream receptor or intracellular signal transducer, converting the signal into a form where it can ultimately trigger a change in the state or activity of a cell.
biological process
    GO:0045744    negative regulation of G-protein coupled receptor protein signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity.
    GO:0009968    negative regulation of signal transduction    Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0008277    regulation of G-protein coupled receptor protein signaling pathway    Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0038032    termination of G-protein coupled receptor signaling pathway    The signaling process in which G-protein coupled receptor signaling is brought to an end. For example, through the action of GTPase-activating proteins (GAPs) that act to accelerate hydrolysis of GTP to GDP on G-alpha proteins, thereby terminating the transduced signal.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0097440    apical dendrite    A dendrite that emerges near the apical pole of a neuron. In bipolar neurons, apical dendrites are located on the opposite side of the soma from the axon.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0000794    condensed nuclear chromosome    A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0016363    nuclear matrix    The dense fibrillar network lying on the inner side of the nuclear membrane.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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        RGS12_HUMAN | O149242ebz

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