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(-) Description

Title :  SOLUTION STRUCTURE OF BV8
 
Authors :  N. L. Daly, D. J. Craik, M. Mobli
Date :  14 Dec 09  (Deposition) - 11 Aug 10  (Release) - 23 Apr 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Beta Strands, Beta Turn, Helix, Disulfide Bond, Secreted, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. A. V. Morales, N. L. Daly, I. Vetter, M. Mobli, I. A. Napier, D. J. Craik, R. J. Lewis, M. J. Christie, G. F. King, P. F. Alewood, T. Durek
Chemical Synthesis And Structure Of The Prokineticin Bv8
Chembiochem V. 11 1882 2010
PubMed-ID: 20677202  |  Reference-DOI: 10.1002/CBIC.201000330

(-) Compounds

Molecule 1 - PROKINETICIN BV8
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonYELLOW-BELLIED TOAD
    Organism ScientificBOMBINA VARIEGATA
    Organism Taxid8348

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KRA)

(-) Sites  (0, 0)

(no "Site" information available for 2KRA)

(-) SS Bonds  (5, 5)

NMR Structure
No.Residues
1A:7 -A:19
2A:13 -A:31
3A:18 -A:59
4A:41 -A:67
5A:61 -A:76

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Val A:48 -Pro A:49

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KRA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2KRA)

(-) Exons   (0, 0)

(no "Exon" information available for 2KRA)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:77
 aligned with BV8_BOMVA | Q9PW66 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:77
                                    29        39        49        59        69        79        89       
             BV8_BOMVA   20 AVITGACDKDVQCGSGTCCAASAWSRNIRFCIPLGNSGEDCHPASHKVPYDGKRLSSLCPCKSGLTCSKSGEKFKCS 96
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains 2kraA00 A:1-77 Lipase, subunit A                                              CATH domains
               Pfam domains Prokineticin-2kraA01 A:1-77                                                   Pfam domains
         Sec.struct. author ........hhhhh...ee.............ee......ee.........................eee....eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  2kra A  1 AVITGACDKDVQCGSGTCCAASAWSRNIRFCIPLGNSGEDCHPASHKVPYDGKRLSSLCPCKSGLTCSKSGEKFKCS 77
                                    10        20        30        40        50        60        70       

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KRA)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (BV8_BOMVA | Q9PW66)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  Cis Peptide Bonds
    Val A:48 - Pro A:49   [ RasMol ]  
 

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